U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ntl-9 CCR4-NOT transcription complex subunit 9 [ Caenorhabditis elegans ]

Gene ID: 175669, updated on 2-Nov-2024

Summary

Go to the top of the page Help
Official Symbol
ntl-9
Official Full Name
CCR4-NOT transcription complex subunit 9
Primary source
WormBase:WBGene00016139
Locus tag
CELE_C26E6.3
See related
AllianceGenome:WB:WBGene00016139
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Involved in hemidesmosome assembly. Predicted to be part of CCR4-NOT core complex. Predicted to be active in P-body. Is expressed in gonad. Orthologous to human CNOT9 (CCR4-NOT transcription complex subunit 9). [provided by Alliance of Genome Resources, Nov 2024]
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See ntl-9 in Genome Data Viewer
Location:
chromosome: III
Exon count:
6
Sequence:
Chromosome: III; NC_003281.10 (4944513..4947317)

Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene F-box/SPRY domain-containing protein 1 Neighboring gene DNA-directed RNA polymerase II subunit RPB2 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003281.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. The Ccr4-Not deadenylase complex constitutes the main poly(A) removal activity in C. elegans. Nousch M, et al. J Cell Sci, 2013 Sep 15. PMID 23843623
  2. Caenorhabditis elegans algn-2 Is Critical for Longevity Conferred by Enhanced Nonsense-Mediated mRNA Decay. Kim EJE, et al. iScience, 2020 Nov 20. PMID 33225240, Free PMC Article
  3. CRT-1/calreticulin and the E3 ligase EEL-1/HUWE1 control hemidesmosome maturation in C. elegans development. Zahreddine H, et al. Curr Biol, 2010 Feb 23. PMID 20153198
  4. LIN-41 and OMA Ribonucleoprotein Complexes Mediate a Translational Repression-to-Activation Switch Controlling Oocyte Meiotic Maturation and the Oocyte-to-Embryo Transition in Caenorhabditis elegans. Tsukamoto T, et al. Genetics, 2017 Aug. PMID 28576864, Free PMC Article
  5. A transcriptional cofactor regulatory network for the C. elegans intestine. Horowitz BB, et al. G3 (Bethesda), 2023 Jul 5. PMID 37119809, Free PMC Article

See all (13) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by WormBase

Process Evidence Code Pubs
involved_in hemidesmosome assembly IGI
Inferred from Genetic Interaction
more info
 PubMed 
involved_in mRNA catabolic process IEA
Inferred from Electronic Annotation
more info
  
involved_in negative regulation of translation IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
part_of CCR4-NOT complex IEA
Inferred from Electronic Annotation
more info
  
part_of CCR4-NOT core complex IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in P-body IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in P-body IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
CCR4-NOT transcription complex subunit 9
NP_001309488.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003281.10 Reference assembly

    Range
    4944513..4947317
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001322583.4 → NP_001309488.1  CCR4-NOT transcription complex subunit 9 [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q18224
    Conserved Domains (1) summary
    pfam04078
    Location:42 → 315
    Rcd1; Cell differentiation family, Rcd1-like
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools