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tag-250 Putative protein tag-250 [ Caenorhabditis elegans ]

Gene ID: 176113, updated on 4-Jan-2025

Summary

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Official Symbol
tag-250
Official Full Name
Putative protein tag-250
Primary source
WormBase:WBGene00016203
Locus tag
CELE_C29E4.5
See related
AllianceGenome:WB:WBGene00016203
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be involved in P granule organization; piRNA processing; and spermatogenesis. Predicted to be active in P granule. Is expressed in hypodermis; intestine; neurons; and pharyngeal muscle cell. Orthologous to human TDRD15 (tudor domain containing 15). [provided by Alliance of Genome Resources, Jan 2025]
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Genomic context

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See tag-250 in Genome Data Viewer
Location:
chromosome: III
Exon count:
14
Sequence:
Chromosome: III; NC_003281.10 (7917987..7924921, complement)

Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene Uncharacterized protein Neighboring gene Polypeptide N-acetylgalactosaminyltransferase 3 Neighboring gene ncRNA Neighboring gene EF-hand domain-containing protein Neighboring gene Spiroplasma plectrovirus-related protein Neighboring gene C2H2-type domain-containing protein Neighboring gene Nuclear pore complex protein 15

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003281.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A transcriptional cofactor regulatory network for the C. elegans intestine. Horowitz BB, et al. G3 (Bethesda), 2023 Jul 5. PMID 37119809, Free PMC Article
  2. A genome-wide study of PDZ-domain interactions in C. elegans reveals a high frequency of non-canonical binding. Lenfant N, et al. BMC Genomics, 2010 Nov 26. PMID 21110867, Free PMC Article
  3. Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network. Simonis N, et al. Nat Methods, 2009 Jan. PMID 19123269, Free PMC Article
  4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in P granule organization IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in piRNA processing IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in spermatogenesis IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in P granule IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
Putative protein tag-250
NP_001021188.2
  • Confirmed by transcript evidence
NP_001379736.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003281.10 Reference assembly

    Range
    7917987..7924921 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001026017.5 → NP_001021188.2  Putative protein tag-250 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001021188.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    C8JQN7, P34344, Q4TTD4
    Conserved Domains (2) summary
    smart00333
    Location:222 → 277
    TUDOR; Tudor domain
    pfam00567
    Location:402 → 522
    TUDOR; Tudor domain

  2. NM_001392147.1 → NP_001379736.1  Putative protein tag-250 [Caenorhabditis elegans]

    Status: REVIEWED

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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