U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

dec-7 Uncharacterized protein [ Caenorhabditis elegans ]

Gene ID: 176404, updated on 2-Nov-2024

Summary

Go to the top of the page Help
Official Symbol
dec-7
Official Full Name
Uncharacterized protein
Primary source
WormBase:WBGene00010540
Locus tag
CELE_K03H1.5
See related
AllianceGenome:WB:WBGene00010540
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable cell adhesion mediator activity. Involved in negative regulation of defecation rhythm. Located in apical junction complex. Is expressed in intestine. Orthologous to human SUSD2 (sushi domain containing 2). [provided by Alliance of Genome Resources, Nov 2024]
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See dec-7 in Genome Data Viewer
Location:
chromosome: III
Exon count:
16
Sequence:
Chromosome: III; NC_003281.10 (9932398..9939704)

Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene Transthyretin-like protein 2 Neighboring gene Transthyretin-like protein 1 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Ovule protein Neighboring gene Wsv008 Neighboring gene ncRNA

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003281.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. DEC-7/SUSD2, a sushi domain-containing protein, regulates an ultradian behavior mediated by intestinal epithelial Ca(2+) oscillations in Caenorhabditis elegans. Laboy JT, et al. Am J Physiol Cell Physiol, 2023 May 1. PMID 37067458, Free PMC Article
  2. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article
  3. OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. Kim W, et al. Genetics, 2018 Oct. PMID 30120140, Free PMC Article
  4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables cell adhesion mediator activity IC
Inferred by Curator
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion via plasma-membrane adhesion molecules IC
Inferred by Curator
more info
 PubMed 
involved_in cell-matrix adhesion IEA
Inferred from Electronic Annotation
more info
  
involved_in negative regulation of defecation rhythm IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in apical junction complex IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in extracellular space IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

Go to the top of the page Help
Preferred Names
Uncharacterized protein
NP_499205.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003281.10 Reference assembly

    Range
    9932398..9939704
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_066804.6 → NP_499205.1  Uncharacterized protein CELE_K03H1.5 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_499205.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P34501
    Conserved Domains (6) summary
    smart00723
    Location:681 → 840
    AMOP; Adhesion-associated domain present in MUC4 and other proteins
    cd00033
    Location:1181 → 1230
    CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system
    smart00429
    Location:468 → 527
    IPT; ig-like, plexins, transcription factors
    smart00539
    Location:286 → 452
    NIDO; Extracellular domain of unknown function in nidogen (entactin) and hypothetical proteins
    pfam10146
    Location:1270 → 1371
    zf-C4H2; Zinc finger-containing protein
    cl02516
    Location:855 → 1055
    VWD; von Willebrand factor type D domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P34501.2

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools