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Y76B12C.3 Selenoprotein F;Selenoprotein F/M domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 176999, updated on 4-Jan-2025

Summary

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Official Symbol
Y76B12C.3
Official Full Name
Selenoprotein F;Selenoprotein F/M domain-containing protein
Primary source
WormBase:WBGene00022297
Locus tag
CELE_Y76B12C.3
See related
AllianceGenome:WB:WBGene00022297
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable oxidoreductase activity. Predicted to be active in endoplasmic reticulum lumen. Is expressed in intestine and pharyngeal gland cell. Orthologous to human SELENOF (selenoprotein F). [provided by Alliance of Genome Resources, Jan 2025]
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Genomic context

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See Y76B12C.3 in Genome Data Viewer
Location:
chromosome: IV
Exon count:
4
Sequence:
Chromosome: IV; NC_003282.8 (1973705..1975682)

Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene Mitochondrial protein M19;Ubiquinol-cytochrome-c reductase complex assembly factor 2 Neighboring gene Protein MNN4-like;Translation initiation factor IF-2 Neighboring gene Neuropeptide-Like Protein Neighboring gene TPR_REGION domain-containing protein Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003282.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules. Cipriani PG, et al. Elife, 2021 Jul 5. PMID 34223818, Free PMC Article
  2. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
  3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables oxidoreductase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in endoplasmic reticulum lumen IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
Selenoprotein F;Selenoprotein F/M domain-containing protein
NP_001368309.1
  • Confirmed by transcript evidence
NP_500152.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003282.8 Reference assembly

    Range
    1973705..1975682
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_067751.5 → NP_500152.1  Selenoprotein F [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_500152.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9N4C6
    Conserved Domains (1) summary
    pfam08806
    Location:77 → 149
    Sep15_SelM; Sep15/SelM redox domain

  2. NM_001380076.1 → NP_001368309.1  Selenoprotein F/M domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    U4PMQ9
    Conserved Domains (1) summary
    pfam08806
    Location:8 → 53
    Sep15_SelM; Sep15/SelM redox domain
Nucleotide Protein
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