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clec-82 C-type lectin domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 177064, updated on 4-Jan-2025

Summary

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Official Symbol
clec-82
Official Full Name
C-type lectin domain-containing protein
Primary source
WormBase:WBGene00021873
Locus tag
CELE_Y54G2A.8
See related
AllianceGenome:WB:WBGene00021873
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Involved in defense response to Gram-positive bacterium. [provided by Alliance of Genome Resources, Jan 2025]
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Genomic context

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See clec-82 in Genome Data Viewer
Location:
chromosome: IV
Exon count:
10
Sequence:
Chromosome: IV; NC_003282.8 (2835664..2838723)

Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene Up-regulated in Daf-2 domain-containing protein Neighboring gene Up-regulated in Daf-2 domain-containing protein Neighboring gene C-type lectin domain-containing protein Neighboring gene ncRNA Neighboring gene C-type lectin domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003282.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Hirudomacin: a Protein with Dual Effects of Direct Bacterial Inhibition and Regulation of Innate Immunity. Du Y, et al. Appl Environ Microbiol, 2023 Jul 26. PMID 37428035, Free PMC Article
  2. Defective apoptotic cell clearance activates innate immune response to protect Caenorhabditis elegans against pathogenic bacteria. Wan J, et al. Virulence, 2021 Dec. PMID 33372828, Free PMC Article
  3. Innate host defense requires TFEB-mediated transcription of cytoprotective and antimicrobial genes. Visvikis O, et al. Immunity, 2014 Jun 19. PMID 24882217, Free PMC Article
  4. Specificity of the innate immune system and diversity of C-type lectin domain (CTLD) proteins in the nematode Caenorhabditis elegans. Schulenburg H, et al. Immunobiology, 2008. PMID 18406370
  5. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by WormBase

Process Evidence Code Pubs
involved_in defense response to Gram-positive bacterium IEP
Inferred from Expression Pattern
more info
 PubMed 

General protein information

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Preferred Names
C-type lectin domain-containing protein
NP_001023507.1
  • Confirmed by transcript evidence
NP_001380093.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003282.8 Reference assembly

    Range
    2835664..2838723
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001028336.4 → NP_001023507.1  C-type lectin domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001023507.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    H2L0R0
    Conserved Domains (1) summary
    smart00034
    Location:22 → 145
    CLECT; C-type lectin (CTL) or carbohydrate-recognition domain (CRD)

  2. NM_001392272.1 → NP_001380093.1  C-type lectin domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q5W7E6
    Conserved Domains (1) summary
    smart00034
    Location:1 → 111
    CLECT; C-type lectin (CTL) or carbohydrate-recognition domain (CRD)
Nucleotide Protein
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