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col-111 Collagen triple helix repeat protein;Nematode cuticle collagen N-terminal domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 177230, updated on 2-Nov-2024

Summary

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Official Symbol
col-111
Official Full Name
Collagen triple helix repeat protein;Nematode cuticle collagen N-terminal domain-containing protein
Primary source
WormBase:WBGene00000685
Locus tag
CELE_F29B9.9
See related
AllianceGenome:WB:WBGene00000685
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be a structural constituent of cuticle. Predicted to be located in membrane. Predicted to be part of collagen trimer. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See col-111 in Genome Data Viewer
Location:
chromosome: IV
Exon count:
3
Sequence:
Chromosome: IV; NC_003282.8 (4655791..4657974, complement)

Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene Pheromone-regulated membrane protein 10 Neighboring gene SUMO-conjugating enzyme UBC9 Neighboring gene Thioredoxin domain-containing protein Neighboring gene Bifunctional arginine demethylase and lysyl-hydroxylase psr-1;JmjC domain-containing protein Neighboring gene Mitochondrial Ribosomal Protein, Small Neighboring gene Cytochrome c oxidase polypeptide VIIc

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003282.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Age-related behaviors have distinct transcriptional profiles in Caenorhabditis elegans. Golden TR, et al. Aging Cell, 2008 Dec. PMID 18778409, Free PMC Article
  2. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article
  3. OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. Kim W, et al. Genetics, 2018 Oct. PMID 30120140, Free PMC Article
  4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables structural constituent of cuticle IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of collagen trimer IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Collagen triple helix repeat protein;Nematode cuticle collagen N-terminal domain-containing protein
NP_001380137.1
  • Partially confirmed by transcript evidence
NP_500607.2
  • Partially confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003282.8 Reference assembly

    Range
    4655791..4657974 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_068206.7 → NP_500607.2  Nematode cuticle collagen N-terminal domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_500607.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9GYI3
    Conserved Domains (1) summary
    smart01088
    Location:8 → 60
    Col_cuticle_N; Nematode cuticle collagen N-terminal domain

  2. NM_001392302.1 → NP_001380137.1  Collagen triple helix repeat protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    U4PM21
Nucleotide Protein
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