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C49H3.3 UPF0642 protein YBL028C [ Caenorhabditis elegans ]

Gene ID: 177582, updated on 4-Jan-2025

Summary

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Official Symbol
C49H3.3
Official Full Name
UPF0642 protein YBL028C
Primary source
WormBase:WBGene00016790
Locus tag
CELE_C49H3.3
See related
AllianceGenome:WB:WBGene00016790
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable basal RNA polymerase II transcription machinery binding activity. Predicted to be involved in dendrite extension. Predicted to be active in nucleolus. Orthologous to human LLPH (LLP homolog, long-term synaptic facilitation factor). [provided by Alliance of Genome Resources, Jan 2025]
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Genomic context

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See C49H3.3 in Genome Data Viewer
Location:
chromosome: IV
Exon count:
4
Sequence:
Chromosome: IV; NC_003282.8 (7924350..7924968)

Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene Exportin-T Neighboring gene BPTI/Kunitz inhibitor domain-containing protein Neighboring gene ncRNA Neighboring gene Small ribosomal subunit protein uS5 Neighboring gene ncRNA Neighboring gene Neuropeptide-Like Protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003282.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules. Cipriani PG, et al. Elife, 2021 Jul 5. PMID 34223818, Free PMC Article
  2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables basal RNA polymerase II transcription machinery binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in dendrite extension IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in nucleolus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
UPF0642 protein YBL028C
NP_501321.1
  • Partially confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003282.8 Reference assembly

    Range
    7924350..7924968
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_068920.4 → NP_501321.1  UPF0642 protein YBL028C [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_501321.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9GYQ6
    Conserved Domains (1) summary
    pfam10169
    Location:3 → 86
    Laps; Learning-associated protein
Nucleotide Protein
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