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aly-1 Chromatin target of PRMT1 protein C-terminal domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 177735, updated on 2-Nov-2024

Summary

Official Symbol
aly-1
Official Full Name
Chromatin target of PRMT1 protein C-terminal domain-containing protein
Primary source
WormBase:WBGene00000120
Locus tag
CELE_C01F6.5
See related
AllianceGenome:WB:WBGene00000120
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable mRNA binding activity. Predicted to be involved in mRNA export from nucleus. Predicted to be active in nucleus. Orthologous to human ALYREF (Aly/REF export factor). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

See aly-1 in Genome Data Viewer
Location:
chromosome: IV
Exon count:
2
Sequence:
Chromosome: IV; NC_003282.8 (9108931..9109753)

Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene Ovule protein Neighboring gene Sex-determination protein fem-3 Neighboring gene ncRNA Neighboring gene ncRNA

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 
enables mRNA binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in mRNA export from nucleus IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
 

General protein information

Preferred Names
Chromatin target of PRMT1 protein C-terminal domain-containing protein
NP_501588.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003282.8 Reference assembly

    Range
    9108931..9109753
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_069187.8NP_501588.1  Chromatin target of PRMT1 protein C-terminal domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_501588.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q17561
    Conserved Domains (1) summary
    cl17169
    Location:73144
    RRM_SF; RNA recognition motif (RRM) superfamily