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aly-2 Chromatin target of PRMT1 protein C-terminal domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 177738, updated on 9-Dec-2024

Summary

Official Symbol
aly-2
Official Full Name
Chromatin target of PRMT1 protein C-terminal domain-containing protein
Primary source
WormBase:WBGene00000121
Locus tag
CELE_F23B2.6
See related
AllianceGenome:WB:WBGene00000121
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable mRNA binding activity. Predicted to be involved in mRNA export from nucleus. Predicted to be active in nucleus. Is expressed in several structures, including anal region; digestive tract; germ line; gonadal primordium; and midbody. Orthologous to human ALYREF (Aly/REF export factor). [provided by Alliance of Genome Resources, Dec 2024]
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Genomic context

See aly-2 in Genome Data Viewer
Location:
chromosome: IV
Exon count:
3
Sequence:
Chromosome: IV; NC_003282.8 (9147468..9148579)

Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene Intraflagellar transport protein 122 homolog Neighboring gene SQPNFLRF-amide Neighboring gene DNA-directed RNA polymerases I, II, and III subunit RPABC4 Neighboring gene pseudo Neighboring gene Uncharacterized protein

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 
enables mRNA binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in mRNA export from nucleus IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
 

General protein information

Preferred Names
Chromatin target of PRMT1 protein C-terminal domain-containing protein
NP_501594.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003282.8 Reference assembly

    Range
    9147468..9148579
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_069193.7NP_501594.1  Chromatin target of PRMT1 protein C-terminal domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_501594.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    O62183
    Conserved Domains (2) summary
    pfam13865
    Location:165227
    FoP_duplication; C-terminal duplication domain of Friend of PRMT1
    cl17169
    Location:81152
    RRM_SF; RNA recognition motif (RRM) superfamily