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dpy-20 Protein dumpy-20 [ Caenorhabditis elegans ]

Gene ID: 178105, updated on 4-Jan-2025

Summary

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Official Symbol
dpy-20
Official Full Name
Protein dumpy-20
Primary source
WormBase:WBGene00001079
Locus tag
CELE_T22B3.1
See related
AllianceGenome:WB:WBGene00001079
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Enables sequence-specific double-stranded DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Jan 2025]
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Genomic context

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See dpy-20 in Genome Data Viewer
Location:
chromosome: IV
Exon count:
7
Sequence:
Chromosome: IV; NC_003282.8 (11696430..11700852, complement)

Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene CidA/LrgA family protein Neighboring gene Calcineurin-like phosphoesterase domain-containing protein;Inner membrane protein Neighboring gene Major sperm protein Neighboring gene Argonaute (plant)-Like Gene

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003282.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolutionarily conserved coding sequences in the dpy-20-unc-22 region of Caenorhabditis elegans. Prasad SS, et al. Genomics, 1989 Aug. PMID 2793177
  2. Molecular cloning and characterization of the dpy-20 gene of Caenorhabditis elegans. Clark DV, et al. Mol Gen Genet, 1995 May 10. PMID 7770042
  3. Effect of the dpy-20 and rol-6 cotransformation markers on alpha-tubulin gene expression in C. elegans transformants. Fukushige T, et al. Transgenic Res, 1995 Sep. PMID 8589736
  4. Structure and expression of the collagen genes of C. elegans. Hirsh D, et al. Ann N Y Acad Sci, 1985. PMID 3868944
  5. Cooperative interactions between the Caenorhabditis elegans homeoproteins UNC-86 and MEC-3. Xue D, et al. Science, 1993 Sep 3. PMID 8103239

See all (38) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables sequence-specific double-stranded DNA binding HDA PubMed 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
Protein dumpy-20
NP_502215.2
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003282.8 Reference assembly

    Range
    11696430..11700852 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_069814.6 → NP_502215.2  Protein dumpy-20 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_502215.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P34807
    Conserved Domains (1) summary
    cl02703
    Location:353 → 393
    zf-BED; BED zinc finger
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P34807.3

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