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ham-1 Stork-head box protein ham-1 [ Caenorhabditis elegans ]

Gene ID: 178205, updated on 9-Dec-2024

Summary

Official Symbol
ham-1
Official Full Name
Stork-head box protein ham-1
Primary source
WormBase:WBGene00001820
Locus tag
CELE_F53B2.6
See related
AllianceGenome:WB:WBGene00001820
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Enables DNA-binding transcription activator activity, RNA polymerase II-specific. Involved in several processes, including asymmetric protein localization involved in cell fate determination; generation of neurons; and protein localization to actomyosin contractile ring. Located in cell cortex and nucleus. Is expressed in several structures, including anal region; digestive tract; gonad; head; and midbody. Human ortholog(s) of this gene implicated in pre-eclampsia. Orthologous to several human genes including STOX1 (storkhead box 1). [provided by Alliance of Genome Resources, Dec 2024]
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Genomic context

See ham-1 in Genome Data Viewer
Location:
chromosome: IV
Exon count:
5
Sequence:
Chromosome: IV; NC_003282.8 (12542183..12545737)

Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Kinase Neighboring gene ncRNA Neighboring gene ncRNA

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

General gene information

Markers

Gene Ontology Provided by WormBase

Component Evidence Code Pubs
located_in cell cortex IDA
Inferred from Direct Assay
more info
PubMed 
located_in cell cortex IEA
Inferred from Electronic Annotation
more info
 
located_in cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 
located_in nucleus IDA
Inferred from Direct Assay
more info
PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
Stork-head box protein ham-1
NP_502401.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003282.8 Reference assembly

    Range
    12542183..12545737
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_070000.8NP_502401.1  Stork-head box protein ham-1 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_502401.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    G5EEC5
    Conserved Domains (1) summary
    pfam10264
    Location:93169
    Stork_head; Winged helix Storkhead-box1 domain