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C48D1.1 Leucine-rich repeat-containing protein 34;TIR domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 178271, updated on 4-Jan-2025

Summary

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Official Symbol
C48D1.1
Official Full Name
Leucine-rich repeat-containing protein 34;TIR domain-containing protein
Primary source
WormBase:WBGene00008177
Locus tag
CELE_C48D1.1
See related
AllianceGenome:WB:WBGene00008177
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be part of Cul2-RING ubiquitin ligase complex. [provided by Alliance of Genome Resources, Jan 2025]
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Genomic context

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See C48D1.1 in Genome Data Viewer
Location:
chromosome: IV
Exon count:
8
Sequence:
Chromosome: IV; NC_003282.8 (13193563..13197382, complement)

Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene Uncharacterized protein Neighboring gene Macro domain-containing protein Neighboring gene VWFD domain-containing protein Neighboring gene ncRNA Neighboring gene Cell death protein 3 subunit p17 Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003282.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Component Evidence Code Pubs
part_of Cul2-RING ubiquitin ligase complex IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
Leucine-rich repeat-containing protein 34;TIR domain-containing protein
NP_001040928.2
  • Confirmed by transcript evidence
NP_001040929.2
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003282.8 Reference assembly

    Range
    13193563..13197382 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001047463.3 → NP_001040928.2  Leucine-rich repeat-containing protein 34 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001040928.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    O02227
    Conserved Domains (2) summary
    sd00033
    Location:124 → 149
    LRR_RI; leucine-rich repeat [structural motif]
    cl42388
    Location:147 → 228
    PPP1R42; protein phosphatase 1 regulatory subunit 42

  2. NM_001047464.4 → NP_001040929.2  TIR domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001040929.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q2EEN7
    Conserved Domains (1) summary
    cl42388
    Location:12 → 93
    PPP1R42; protein phosphatase 1 regulatory subunit 42
Nucleotide Protein
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