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Y10G11A.1 5'-nucleotidase [ Caenorhabditis elegans ]

Gene ID: 178457, updated on 9-Dec-2024

Summary

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Official Symbol
Y10G11A.1
Official Full Name
5'-nucleotidase
Primary source
WormBase:WBGene00012423
Locus tag
CELE_Y10G11A.1
See related
AllianceGenome:WB:WBGene00012423
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable 5'-nucleotidase activity. Predicted to be involved in nucleotide metabolic process. Predicted to be located in membrane. Predicted to be active in cytoplasm. Orthologous to human NT5C3B (5'-nucleotidase, cytosolic IIIB). [provided by Alliance of Genome Resources, Dec 2024]
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Genomic context

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See Y10G11A.1 in Genome Data Viewer
Location:
chromosome: IV
Exon count:
4
Sequence:
Chromosome: IV; NC_003282.8 (16424637..16429895)

Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene tRNA-His Neighboring gene Envelope glycoprotein UL132;Glycoprotein;Small integral membrane protein 34A Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Dynein light chain

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003282.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
  2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables 5'-nucleotidase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables 5'-nucleotidase activity IEA
Inferred from Electronic Annotation
more info
  
enables XMP 5'-nucleosidase activity IEA
Inferred from Electronic Annotation
more info
  
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
  
enables magnesium ion binding IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables nucleotide binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in nucleotide metabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
5'-nucleotidase
NP_001255892.1
  • Confirmed by transcript evidence
NP_001255893.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003282.8 Reference assembly

    Range
    16424637..16429895
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001268963.2 → NP_001255892.1  5'-nucleotidase [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001255892.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q95ZJ9
    Conserved Domains (1) summary
    pfam05822
    Location:47 → 296
    UMPH-1; Pyrimidine 5'-nucleotidase (UMPH-1)

  2. NM_001268964.3 → NP_001255893.1  5'-nucleotidase [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001255893.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    E4MYG2
    Conserved Domains (1) summary
    cl21460
    Location:1 → 151
    HAD_like; Haloacid Dehalogenase-like Hydrolases

RNA

  1. NR_131668.1 RNA Sequence

    Status: REVIEWED

Nucleotide Protein
Heading Accession and Version

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