U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

nhr-13 Nuclear hormone receptor family member nhr-13 [ Caenorhabditis elegans ]

Gene ID: 178696, updated on 4-Jan-2025

Summary

Go to the top of the page Help
Official Symbol
nhr-13
Official Full Name
Nuclear hormone receptor family member nhr-13
Primary source
WormBase:WBGene00003612
Locus tag
CELE_Y5H2B.2
See related
AllianceGenome:WB:WBGene00003612
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be active in nucleus. Is expressed in intestine. [provided by Alliance of Genome Resources, Jan 2025]
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See nhr-13 in Genome Data Viewer
Location:
chromosome: V
Exon count:
10
Sequence:
Chromosome: V; NC_003283.11 (2192485..2196827)

Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene DUF2250 domain-containing protein Neighboring gene Serpentine Receptor, class BC (Class B-like) Neighboring gene Cytochrome P450 4c3 Neighboring gene CYtochrome P450 family Neighboring gene ncRNA

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003283.11

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Nuclear receptors NHR-49 and NHR-79 promote peroxisome proliferation to compensate for aldehyde dehydrogenase deficiency in C. elegans. Zeng L, et al. PLoS Genet, 2021 Jul. PMID 34237064, Free PMC Article
  2. Coordinate regulation of lipid metabolism by novel nuclear receptor partnerships. Pathare PP, et al. PLoS Genet, 2012. PMID 22511885, Free PMC Article
  3. Extensive rewiring and complex evolutionary dynamics in a C. elegans multiparameter transcription factor network. Reece-Hoyes JS, et al. Mol Cell, 2013 Jul 11. PMID 23791784, Free PMC Article
  4. Transcriptional regulation. Okkema PG, et al. WormBook, 2005 Dec 23. PMID 18050428, Free PMC Article
  5. Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network. Simonis N, et al. Nat Methods, 2009 Jan. PMID 19123269, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
Nuclear hormone receptor family member nhr-13
NP_001024268.1
  • Confirmed by transcript evidence
NP_001024269.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003283.11 Reference assembly

    Range
    2192485..2196827
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001029098.6 → NP_001024269.1  Nuclear hormone receptor family member nhr-13 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001024269.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q6F3C8, Q9N4Q7
    UniProtKB/TrEMBL
    Q9XYB8
    Conserved Domains (2) summary
    cd06157
    Location:198 → 382
    NR_LBD; The ligand binding domain of nuclear receptors, a family of ligand-activated transcription regulators
    smart00399
    Location:21 → 79
    ZnF_C4; c4 zinc finger in nuclear hormone receptors

  2. NM_001029097.6 → NP_001024268.1  Nuclear hormone receptor family member nhr-13 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001024268.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9XYB8
    Conserved Domains (2) summary
    cd06157
    Location:198 → 384
    NR_LBD; The ligand binding domain of nuclear receptors, a family of ligand-activated transcription regulators
    smart00399
    Location:21 → 79
    ZnF_C4; c4 zinc finger in nuclear hormone receptors
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9N4Q7.3

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Chemical Information
Molecular Biology Databases
Research Materials
Tools