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fipp-1 Pre-mRNA polyadenylation factor Fip1 domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 178835, updated on 4-Jan-2025

Summary

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Official Symbol
fipp-1
Official Full Name
Pre-mRNA polyadenylation factor Fip1 domain-containing protein
Primary source
WormBase:WBGene00017988
Locus tag
CELE_F32D1.9
See related
AllianceGenome:WB:WBGene00017988
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be involved in mRNA processing. Predicted to be located in nucleus. Predicted to be part of mRNA cleavage and polyadenylation specificity factor complex. Orthologous to human FIP1L1 (factor interacting with PAPOLA and CPSF1). [provided by Alliance of Genome Resources, Jan 2025]
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Genomic context

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See fipp-1 in Genome Data Viewer
Location:
chromosome: V
Exon count:
5
Sequence:
Chromosome: V; NC_003283.11 (4371807..4373872)

Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene Activin_recp domain-containing protein Neighboring gene GMP reductase Neighboring gene Negative Effect on Gut development Neighboring gene Protein lilliputian Neighboring gene BSD domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003283.11

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Spatiotemporal m(i)RNA Architecture and 3' UTR Regulation in the C. elegans Germline. Diag A, et al. Dev Cell, 2018 Dec 17. PMID 30416012
  2. Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules. Cipriani PG, et al. Elife, 2021 Jul 5. PMID 34223818, Free PMC Article
  3. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article
  4. OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. Kim W, et al. Genetics, 2018 Oct. PMID 30120140, Free PMC Article
  5. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Process Evidence Code Pubs
involved_in mRNA processing IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of mRNA cleavage and polyadenylation specificity factor complex IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Pre-mRNA polyadenylation factor Fip1 domain-containing protein
NP_001317811.1
  • Confirmed by transcript evidence
NP_504203.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003283.11 Reference assembly

    Range
    4371807..4373872
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001330860.4 → NP_001317811.1  Pre-mRNA polyadenylation factor Fip1 domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A164D3G3
    Conserved Domains (1) summary
    pfam05182
    Location:134 → 176
    Fip1; Fip1 motif

  2. NM_071802.6 → NP_504203.1  Pre-mRNA polyadenylation factor Fip1 domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_504203.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    O16293
    Conserved Domains (1) summary
    pfam05182
    Location:134 → 176
    Fip1; Fip1 motif
Nucleotide Protein
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