U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

clik-1 Calponin-like protein OV9M [ Caenorhabditis elegans ]

Gene ID: 179069, updated on 4-Jan-2025

Summary

Go to the top of the page Help
Official Symbol
clik-1
Official Full Name
Calponin-like protein OV9M
Primary source
WormBase:WBGene00020808
Locus tag
CELE_T25F10.6
See related
AllianceGenome:WB:WBGene00020808
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable actin filament binding activity. Predicted to be involved in actin filament organization. Predicted to be active in actin cytoskeleton. Is expressed in body wall musculature. [provided by Alliance of Genome Resources, Jan 2025]
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See clik-1 in Genome Data Viewer
Location:
chromosome: V
Exon count:
7
Sequence:
Chromosome: V; NC_003283.11 (6765768..6768732, complement)

Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene Protein dbl-1 Neighboring gene Neur_chan_LBD domain-containing protein Neighboring gene Tetratricopeptide repeat protein 8 Neighboring gene Uncharacterized protein Neighboring gene Serpentine Receptor, class T Neighboring gene Uncharacterized protein

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003283.11

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Segregated localization of two calponin-related proteins within sarcomeric thin filaments in Caenorhabditis elegans striated muscle. Ono S. Cytoskeleton (Hoboken), 2024 Feb-Mar. PMID 37792405, Free PMC Article
  2. Two Caenorhabditis elegans calponin-related proteins have overlapping functions that maintain cytoskeletal integrity and are essential for reproduction. Ono S, et al. J Biol Chem, 2020 Aug 21. PMID 32554465, Free PMC Article
  3. An Efficient Genome Editing Strategy To Generate Putative Null Mutants in Caenorhabditis elegans Using CRISPR/Cas9. Wang H, et al. G3 (Bethesda), 2018 Nov 6. PMID 30224336, Free PMC Article
  4. The Caenorhabditis elegans muscle-affecting gene unc-87 encodes a novel thin filament-associated protein. Goetinck S, et al. J Cell Biol, 1994 Oct. PMID 7929573, Free PMC Article
  5. Identification of CED-3 substrates by a yeast-based screening method. Kim SY, et al. Mol Biotechnol, 2004 May. PMID 15122042

See all (18) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Two Caenorhabditis elegans calponin-related proteins have overlapping functions that maintain cytoskeletal integrity and are essential for reproduction.
    Title: Two Caenorhabditis elegans calponin-related proteins have overlapping functions that maintain cytoskeletal integrity and are essential for reproduction.
Submit: New GeneRIF Correction

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables actin filament binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in actin filament organization IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in actin cytoskeleton IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

Go to the top of the page Help
Preferred Names
Calponin-like protein OV9M
NP_001024158.1
  • Confirmed by transcript evidence
NP_001368068.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003283.11 Reference assembly

    Range
    6765768..6768732 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001028987.4 → NP_001024158.1  Calponin-like protein OV9M [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001024158.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q23050
    Conserved Domains (1) summary
    pfam00402
    Location:241 → 264
    Calponin; Calponin family repeat

  2. NM_001380677.2 → NP_001368068.1  Calponin-like protein OV9M [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    H2L0M6
    Conserved Domains (1) summary
    pfam00402
    Location:103 → 127
    Calponin; Calponin family repeat
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools