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glr-5 GLutamate Receptor family (AMPA) [ Caenorhabditis elegans ]

Gene ID: 179251, updated on 4-Jan-2025

Summary

Official Symbol
glr-5
Official Full Name
GLutamate Receptor family (AMPA)
Primary source
WormBase:WBGene00001616
Locus tag
CELE_ZC196.7
See related
AllianceGenome:WB:WBGene00001616
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable glutamate receptor activity and transmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potential. Predicted to be involved in glutamatergic synaptic transmission and modulation of chemical synaptic transmission. Predicted to be located in postsynaptic membrane. Predicted to be active in postsynaptic density membrane. Is expressed in neurons. Orthologous to human GRIK4 (glutamate ionotropic receptor kainate type subunit 4). [provided by Alliance of Genome Resources, Jan 2025]
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Genomic context

See glr-5 in Genome Data Viewer
Location:
chromosome: V
Exon count:
12
Sequence:
Chromosome: V; NC_003283.11 (8716495..8720516)

Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene Saposin B-type domain-containing protein;Transposase Neighboring gene Tandem-repeating region of mucin epiglycanin-like domain-containing protein Neighboring gene ncRNA Neighboring gene G_PROTEIN_RECEP_F1_2 domain-containing protein Neighboring gene G-protein coupled receptors family 1 profile domain-containing protein;G_PROTEIN_RECEP_F1_2 domain-containing protein Neighboring gene dietary restriction over expressed

Bibliography

General gene information

Markers

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables glutamate receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables ligand-gated monoatomic ion channel activity IEA
Inferred from Electronic Annotation
more info
 
enables monoatomic ion channel activity IEA
Inferred from Electronic Annotation
more info
 
enables signaling receptor activity IEA
Inferred from Electronic Annotation
more info
 
enables transmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potential IBA
Inferred from Biological aspect of Ancestor
more info
 
Process Evidence Code Pubs
involved_in modulation of chemical synaptic transmission IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in monoatomic ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 
involved_in monoatomic ion transport IEA
Inferred from Electronic Annotation
more info
 
involved_in regulation of postsynaptic membrane potential IEA
Inferred from Electronic Annotation
more info
 
involved_in synaptic transmission, glutamatergic IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 
is_active_in postsynaptic density membrane IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in postsynaptic membrane IEA
Inferred from Electronic Annotation
more info
 
located_in synapse IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
GLutamate Receptor family (AMPA)
NP_505244.1
  • Product from WormBase gene class glr;
    Partially confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003283.11 Reference assembly

    Range
    8716495..8720516
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_072843.6NP_505244.1  GLutamate Receptor family (AMPA) [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_505244.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    O01623
    Conserved Domains (4) summary
    cd06381
    Location:26418
    PBP1_iGluR_delta_like; N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2
    cd13714
    Location:438819
    PBP2_iGluR_Kainate; Kainate receptor of the type 2 periplasmic-binding fold superfamily
    pfam00060
    Location:568855
    Lig_chan; Ligand-gated ion channel
    pfam01094
    Location:38377
    ANF_receptor; Receptor family ligand binding region