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F21C10.7 Ig-like domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 179292, updated on 18-Sep-2024

Summary

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Official Symbol
F21C10.7
Official Full Name
Ig-like domain-containing protein
Primary source
WormBase:WBGene00017657
Locus tag
CELE_F21C10.7
See related
AllianceGenome:WB:WBGene00017657
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
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Genomic context

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See F21C10.7 in Genome Data Viewer
Location:
chromosome: V
Exon count:
26
Sequence:
Chromosome: V; NC_003283.11 (9112767..9122189)

Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Uncharacterized protein Neighboring gene Venom protein Neighboring gene CX domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003283.11

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Hippo Pathway Is Essential for Maintenance of Apicobasal Polarity in the Growing Intestine of Caenorhabditis elegans. Lee H, et al. Genetics, 2019 Oct. PMID 31358532, Free PMC Article
  2. A modified TurboID approach identifies tissue-specific centriolar components in C. elegans. Holzer E, et al. PLoS Genet, 2022 Apr. PMID 35442950, Free PMC Article
  3. Depletion of endogenously biotinylated carboxylases enhances the sensitivity of TurboID-mediated proximity labeling in Caenorhabditis elegans. Artan M, et al. J Biol Chem, 2022 Sep. PMID 35933017, Free PMC Article
  4. Interactome analysis of Caenorhabditis elegans synapses by TurboID-based proximity labeling. Artan M, et al. J Biol Chem, 2021 Sep. PMID 34416233, Free PMC Article
  5. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

General protein information

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Preferred Names
Ig-like domain-containing protein
NP_505362.2
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003283.11 Reference assembly

    Range
    9112767..9122189
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_072961.6 → NP_505362.2  Ig-like domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_505362.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q19663
    Conserved Domains (6) summary
    smart00408
    Location:1401 → 1468
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:1284 → 1366
    IG_like; Immunoglobulin like
    COG1340
    Location:714 → 1023
    COG1340; Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]
    pfam07679
    Location:1172 → 1261
    I-set; Immunoglobulin I-set domain
    cl02488
    Location:834 → 1018
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    cl11960
    Location:1295 → 1366
    Ig; Immunoglobulin domain
Nucleotide Protein
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