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zip-10 Transcription factor zip-10 [ Caenorhabditis elegans ]

Gene ID: 179599, updated on 9-Dec-2024

Summary

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Official Symbol
zip-10
Official Full Name
Transcription factor zip-10
Primary source
WormBase:WBGene00012101
Locus tag
CELE_T27F2.4
See related
AllianceGenome:WB:WBGene00012101
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Enables core promoter sequence-specific DNA binding activity. Involved in regulation of gene expression. Located in nucleus. Is expressed in intestine and neurons. [provided by Alliance of Genome Resources, Dec 2024]
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Genomic context

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See zip-10 in Genome Data Viewer
Location:
chromosome: V
Exon count:
2
Sequence:
Chromosome: V; NC_003283.11 (11650079..11650762, complement)

Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Chromosomal passenger complex protein bir-1 Neighboring gene mammalian SKIP (Ski interacting protein) homolog Neighboring gene ncRNA Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003283.11

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A genetic program mediates cold-warming response and promotes stress-induced phenoptosis in C. elegans. Jiang W, et al. Elife, 2018 Apr 17. PMID 29664006, Free PMC Article
  2. An intestinal microRNA modulates the homeostatic adaptation to chronic oxidative stress in C. elegans. Kato M, et al. Aging (Albany NY), 2016 Sep 12. PMID 27623524, Free PMC Article
  3. GABAergic signaling between enteric neurons and intestinal smooth muscle promotes innate immunity and gut defense in Caenorhabditis elegans. Liu J, et al. Immunity, 2023 Jul 11. PMID 37437538
  4. GPCR signaling regulates severe stress-induced organismic death in Caenorhabditis elegans. Wang C, et al. Aging Cell, 2023 Jan. PMID 36415159, Free PMC Article
  5. The bZIP transcription factor BATF3/ZIP-10 suppresses innate immunity by attenuating PMK-1/p38 signaling. Irfan Afridi M, et al. Int Immunol, 2023 Apr 4. PMID 36409527

See all (15) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables core promoter sequence-specific DNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
involved_in innate immune response HEP PubMed 
involved_in regulation of gene expression IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Transcription factor zip-10
NP_505951.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003283.11 Reference assembly

    Range
    11650079..11650762 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_073550.8 → NP_505951.1  Transcription factor zip-10 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_505951.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q22835
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q22835.1

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