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nhr-54 Nuclear hormone receptor family member nhr-54 [ Caenorhabditis elegans ]

Gene ID: 180106, updated on 4-Jan-2025

Summary

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Official Symbol
nhr-54
Official Full Name
Nuclear hormone receptor family member nhr-54
Primary source
WormBase:WBGene00003644
Locus tag
CELE_F36D3.2
See related
AllianceGenome:WB:WBGene00003644
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. Is expressed in head neurons; intestine; pharynx; and tail neurons. [provided by Alliance of Genome Resources, Jan 2025]
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Genomic context

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See nhr-54 in Genome Data Viewer
Location:
chromosome: V
Exon count:
8
Sequence:
Chromosome: V; NC_003283.11 (16503944..16505928, complement)

Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene AUDH_Cupin domain-containing protein Neighboring gene Secreted protein Neighboring gene Gustatory receptor Neighboring gene BRCT domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003283.11

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Distinct patterns of gene and protein expression elicited by organophosphorus pesticides in Caenorhabditis elegans. Lewis JA, et al. BMC Genomics, 2009 Apr 29. PMID 19402892, Free PMC Article
  2. Transcriptional regulation. Okkema PG, et al. WormBook, 2005 Dec 23. PMID 18050428, Free PMC Article
  3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Nuclear hormone receptor family member nhr-54
NP_507179.3
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003283.11 Reference assembly

    Range
    16503944..16505928 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_074778.6 → NP_507179.3  Nuclear hormone receptor family member nhr-54 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_507179.3

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O45460, Q9GTF9
    Conserved Domains (2) summary
    smart00399
    Location:16 → 88
    ZnF_C4; c4 zinc finger in nuclear hormone receptors
    pfam00104
    Location:186 → 399
    Hormone_recep; Ligand-binding domain of nuclear hormone receptor
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O45460.1

Gene LinkOut

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