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Y39B6A.30 Protein-tyrosine-phosphatase [ Caenorhabditis elegans ]

Gene ID: 180248, updated on 4-Jan-2025

Summary

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Official Symbol
Y39B6A.30
Official Full Name
Protein-tyrosine-phosphatase
Primary source
WormBase:WBGene00012689
Locus tag
CELE_Y39B6A.30
See related
AllianceGenome:WB:WBGene00012689
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable protein tyrosine phosphatase activity. Predicted to be involved in protein dephosphorylation. Predicted to be located in membrane. [provided by Alliance of Genome Resources, Jan 2025]
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Genomic context

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See Y39B6A.30 in Genome Data Viewer
Location:
chromosome: V
Exon count:
8
Sequence:
Chromosome: V; NC_003283.11 (19014573..19020062)

Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene Ribosome biogenesis protein NOP53 Neighboring gene pseudo Neighboring gene UNC93-like protein MFSD11 Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003283.11

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables protein tyrosine phosphatase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in protein dephosphorylation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Protein-tyrosine-phosphatase
NP_741667.2
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003283.11 Reference assembly

    Range
    19014573..19020062
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_171577.3 → NP_741667.2  Protein-tyrosine-phosphatase [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_741667.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q8MYN1
    Conserved Domains (3) summary
    smart00453
    Location:39 → 106
    WSN; Worm-specific (usually) N-terminal domain
    cd00047
    Location:1104 → 1342
    PTPc; Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr ...
    pfam00102
    Location:1104 → 1340
    Y_phosphatase; Protein-tyrosine phosphatase
Nucleotide Protein
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