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Y39B6A.1 Histidine-rich glycoprotein-like [ Caenorhabditis elegans ]

Gene ID: 180264, updated on 4-Jan-2025

Summary

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Official Symbol
Y39B6A.1
Official Full Name
Histidine-rich glycoprotein-like
Primary source
WormBase:WBGene00012664
Locus tag
CELE_Y39B6A.1
See related
AllianceGenome:WB:WBGene00012664
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be active in nucleolus and nucleoplasm. [provided by Alliance of Genome Resources, Jan 2025]
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Genomic context

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See Y39B6A.1 in Genome Data Viewer
Location:
chromosome: V
Exon count:
3
Sequence:
Chromosome: V; NC_003283.11 (19201016..19203607, complement)

Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene Iron-sulfur cluster assembly 1 homolog, mitochondrial Neighboring gene Serine/threonine specific protein phosphatases domain-containing protein;Serine/threonine-protein phosphatase 5 Neighboring gene ncRNA Neighboring gene Nuclear hormone receptor family member nhr-79;Nuclear receptor domain-containing protein Neighboring gene Gustatory receptor

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003283.11

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. F-actin asymmetry and the endoplasmic reticulum-associated TCC-1 protein contribute to stereotypic spindle movements in the Caenorhabditis elegans embryo. Berends CW, et al. Mol Biol Cell, 2013 Jul. PMID 23699393, Free PMC Article
  2. A combined binary interaction and phenotypic map of C. elegans cell polarity proteins. Koorman T, et al. Nat Cell Biol, 2016 Mar. PMID 26780296, Free PMC Article
  3. A protein domain-based interactome network for C. elegans early embryogenesis. Boxem M, et al. Cell, 2008 Aug 8. PMID 18692475, Free PMC Article
  4. A map of the interactome network of the metazoan C. elegans. Li S, et al. Science, 2004 Jan 23. PMID 14704431, Free PMC Article
  5. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Component Evidence Code Pubs
is_active_in nucleolus IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in nucleoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
Histidine-rich glycoprotein-like
NP_741698.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003283.11 Reference assembly

    Range
    19201016..19203607 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_171608.6 → NP_741698.1  Histidine-rich glycoprotein-like [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_741698.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9NES7
Nucleotide Protein
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