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M04C3.2 SNF2 N-terminal domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 180274, updated on 2-Nov-2024

Summary

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Official Symbol
M04C3.2
Official Full Name
SNF2 N-terminal domain-containing protein
Primary source
WormBase:WBGene00010851
Locus tag
CELE_M04C3.2
See related
AllianceGenome:WB:WBGene00010851
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable ATP binding activity and ATP-dependent chromatin remodeler activity. Involved in innate immune response. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See M04C3.2 in Genome Data Viewer
Location:
chromosome: V
Exon count:
4
Sequence:
Chromosome: V; NC_003283.11 (19445873..19448905, complement)

Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene BACK domain-containing protein;NR LBD domain-containing protein Neighboring gene SNF2 N-terminal domain-containing protein Neighboring gene Glutaredoxin;Spiroplasma plectrovirus-related protein;Uncharacterized protein Neighboring gene SNF2 N-terminal domain-containing protein Neighboring gene Uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003283.11

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A conserved role for a GATA transcription factor in regulating epithelial innate immune responses. Shapira M, et al. Proc Natl Acad Sci U S A, 2006 Sep 19. PMID 16968778, Free PMC Article
  2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables ATP-dependent chromatin remodeler activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
  
involved_in innate immune response HEP PubMed 

General protein information

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Preferred Names
SNF2 N-terminal domain-containing protein
NP_001256858.1
  • Confirmed by transcript evidence
NP_001370286.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003283.11 Reference assembly

    Range
    19445873..19448905 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001269929.2 → NP_001256858.1  SNF2 N-terminal domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001256858.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    G1K104
    Conserved Domains (1) summary
    cl28899
    Location:218 → 441
    DEAD-like_helicase_N; N-terminal helicase domain of the DEAD-box helicase superfamily

  2. NM_001383497.1 → NP_001370286.1  SNF2 N-terminal domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    G1K101
    Conserved Domains (1) summary
    cl28899
    Location:218 → 441
    DEAD-like_helicase_N; N-terminal helicase domain of the DEAD-box helicase superfamily
Nucleotide Protein
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