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Y113G7C.1 Protein-tyrosine-phosphatase [ Caenorhabditis elegans ]

Gene ID: 180332, updated on 2-Nov-2024

Summary

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Official Symbol
Y113G7C.1
Official Full Name
Protein-tyrosine-phosphatase
Primary source
WormBase:WBGene00013771
Locus tag
CELE_Y113G7C.1
See related
AllianceGenome:WB:WBGene00013771
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable protein tyrosine phosphatase activity. Predicted to be involved in protein dephosphorylation. Predicted to be located in membrane. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See Y113G7C.1 in Genome Data Viewer
Location:
chromosome: V
Exon count:
10
Sequence:
Chromosome: V; NC_003283.11 (20317742..20324032)

Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene FRIGIDA-like protein Neighboring gene PAN-3 domain-containing protein Neighboring gene ncRNA Neighboring gene DUF19 domain-containing protein Neighboring gene Activin_recp domain-containing protein;UPAR/Ly6 domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003283.11

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables protein tyrosine phosphatase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in protein dephosphorylation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Protein-tyrosine-phosphatase
NP_507918.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003283.11 Reference assembly

    Range
    20317742..20324032
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_075517.5 → NP_507918.1  Protein-tyrosine-phosphatase [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_507918.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9XWA6
    Conserved Domains (4) summary
    smart00453
    Location:172 → 239
    WSN; Worm-specific (usually) N-terminal domain
    cd00047
    Location:1196 → 1428
    PTPc; Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr ...
    pfam00102
    Location:1194 → 1426
    Y_phosphatase; Protein-tyrosine phosphatase
    pfam05672
    Location:1015 → 1145
    MAP7; MAP7 (E-MAP-115) family
Nucleotide Protein
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