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igcm-1 B-cell receptor CD22-like [ Caenorhabditis elegans ]

Gene ID: 180433, updated on 9-Dec-2024

Summary

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Official Symbol
igcm-1
Official Full Name
B-cell receptor CD22-like
Primary source
WormBase:WBGene00018215
Locus tag
CELE_F39H12.4
See related
AllianceGenome:WB:WBGene00018215
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable cell adhesion molecule binding activity. Predicted to be involved in cell-cell adhesion. Predicted to be located in membrane. Predicted to be active in cell-cell junction and plasma membrane. Is expressed in arcade cell; intestine; nervous system; pharyngeal cell; and seam cell. [provided by Alliance of Genome Resources, Dec 2024]
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Genomic context

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See igcm-1 in Genome Data Viewer
Location:
chromosome: X
Exon count:
16
Sequence:
Chromosome: X; NC_003284.9 (845731..851521, complement)

Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene Pericentrin Neighboring gene RIIa domain-containing protein Neighboring gene ncRNA Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003284.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. SAX-7/L1CAM and HMR-1/cadherin function redundantly in blastomere compaction and non-muscle myosin accumulation during Caenorhabditis elegans gastrulation. Grana TM, et al. Dev Biol, 2010 Aug 15. PMID 20515680, Free PMC Article
  2. Transcriptomics of ivermectin response in Caenorhabditis elegans: Integrating abamectin quantitative trait loci and comparison to the Ivermectin-exposed DA1316 strain. Dube F, et al. PLoS One, 2023. PMID 37141255, Free PMC Article
  3. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
  4. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article
  5. OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. Kim W, et al. Genetics, 2018 Oct. PMID 30120140, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables cell adhesion molecule binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in cell-cell adhesion IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in cell-cell junction IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
B-cell receptor CD22-like
NP_508166.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003284.9 Reference assembly

    Range
    845731..851521 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_075765.8 → NP_508166.1  B-cell receptor CD22-like [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_508166.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9TXI8
    Conserved Domains (7) summary
    cd00096
    Location:537 → 615
    Ig; Immunoglobulin domain
    smart00408
    Location:646 → 719
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:644 → 728
    IG_like; Immunoglobulin like
    cd00063
    Location:733 → 843
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam13895
    Location:429 → 513
    Ig_2; Immunoglobulin domain
    pfam13927
    Location:245 → 316
    Ig_3; Immunoglobulin domain
    cl11960
    Location:146 → 226
    Ig; Immunoglobulin domain
Nucleotide Protein
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