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LOC18101974 homeobox-leucine zipper protein REVOLUTA [ Populus trichocarpa (black cottonwood) ]

Gene ID: 18101974, updated on 23-Nov-2023

Summary

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Gene symbol
LOC18101974
Gene description
homeobox-leucine zipper protein REVOLUTA
Locus tag
POPTR_009G014500v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Populus trichocarpa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Also known as
HB1
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Genomic context

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See LOC18101974 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
18
Annotation release Status Assembly Chr Location
102 current P.trichocarpa_v4.1 (GCF_000002775.5) 9 NC_037293.2 (2533006..2541965)
101 previous assembly Pop_tri_v3 (GCF_000002775.4) 9 NC_037293.1 (2486011..2495025)

Chromosome 9 - NC_037293.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC7491132 Neighboring gene vacuolar fusion protein MON1 homolog Neighboring gene CASP-like protein 5A2 Neighboring gene uncharacterized LOC7489334

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Developmental and seasonal expression of PtaHB1, a Populus gene encoding a class III HD-Zip protein, is closely associated with secondary growth and inversely correlated with the level of microRNA (miR166). Ko JH, et al. New Phytol, 2006. PMID 16411950
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables lipid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
homeobox-leucine zipper protein REVOLUTA
Names
HD-ZIP family protein
class III HD-Zip protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.trichocarpa_v4.1 Primary Assembly

Genomic

  1. NC_037293.2 Reference P.trichocarpa_v4.1 Primary Assembly

    Range
    2533006..2541965
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006378912.3 → XP_006378974.2  homeobox-leucine zipper protein REVOLUTA

    UniProtKB/TrEMBL
    A0A3N7FHA2, U5G3D4
    Conserved Domains (4) summary
    cd08875
    Location:159 → 375
    START_ArGLABRA2_like; C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins
    cd14686
    Location:79 → 118
    bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain
    pfam00046
    Location:27 → 84
    Homeobox; Homeobox domain
    pfam08670
    Location:698 → 838
    MEKHLA; MEKHLA domain
Nucleotide Protein
Heading Accession and Version

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