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lpr-3 LiPocalin-Related protein [ Caenorhabditis elegans ]

Gene ID: 181295, updated on 2-Nov-2024

Summary

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Official Symbol
lpr-3
Official Full Name
LiPocalin-Related protein
Primary source
WormBase:WBGene00012261
Locus tag
CELE_W04G3.8
See related
AllianceGenome:WB:WBGene00012261
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be involved in lipid transport. Predicted to be located in extracellular region. Is expressed in excretory system; hypodermis; intestine; and vulva. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See lpr-3 in Genome Data Viewer
Location:
chromosome: X
Exon count:
7
Sequence:
Chromosome: X; NC_003284.9 (11057401..11059793)

Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Glycosyltransferase 2-like domain-containing protein Neighboring gene ncRNA Neighboring gene LiPocalin-Related protein Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003284.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Caenorhabditis elegans Patched domain protein PTR-4 is required for proper organization of the precuticular apical extracellular matrix. Cohen JD, et al. Genetics, 2021 Nov 5. PMID 34740248, Free PMC Article
  2. Lipocalins Are Required for Apical Extracellular Matrix Organization and Remodeling in Caenorhabditis elegans. Forman-Rubinsky R, et al. Genetics, 2017 Oct. PMID 28842397, Free PMC Article
  3. Lipocalin signaling controls unicellular tube development in the Caenorhabditis elegans excretory system. Stone CE, et al. Dev Biol, 2009 May 15. PMID 19269285, Free PMC Article
  4. C. elegans BLMP-1 controls apical epidermal cell morphology by repressing expression of mannosyltransferase bus-8 and molting signal mlt-8. Wu YZ, et al. Dev Biol, 2022 Jun. PMID 35367457
  5. Gene regulatory network inference in long-lived C. elegans reveals modular properties that are predictive of novel aging genes. Suriyalaksh M, et al. iScience, 2022 Jan 21. PMID 35036864, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. LPR-3 is required for apical extracellular matrix organization, clearance and remodeling.
    Title: Lipocalins Are Required for Apical Extracellular Matrix Organization and Remodeling in Caenorhabditis elegans.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Process Evidence Code Pubs
involved_in lipid transport ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 

General protein information

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Preferred Names
LiPocalin-Related protein
NP_509849.1
  • Product from WormBase gene class lpr;
    Partially confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003284.9 Reference assembly

    Range
    11057401..11059793
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_077448.6 → NP_509849.1  LiPocalin-Related protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_509849.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    G5EEA2
Nucleotide Protein
Heading Accession and Version

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