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C06G1.1 Lipid-binding serum glycoprotein C-terminal domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 181720, updated on 4-Jan-2025

Summary

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Official Symbol
C06G1.1
Official Full Name
Lipid-binding serum glycoprotein C-terminal domain-containing protein
Primary source
WormBase:WBGene00015545
Locus tag
CELE_C06G1.1
See related
AllianceGenome:WB:WBGene00015545
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable lipid binding activity. Predicted to be active in extracellular space. Is expressed in excretory system; hypodermis; and vulval muscle. Orthologous to human BPIFC (BPI fold containing family C). [provided by Alliance of Genome Resources, Jan 2025]
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Genomic context

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See C06G1.1 in Genome Data Viewer
Location:
chromosome: X
Exon count:
12
Sequence:
Chromosome: X; NC_003284.9 (16633352..16637632)

Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene tRNA-His Neighboring gene EF-hand domain-containing protein Neighboring gene ncRNA Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003284.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables lipid binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in extracellular space IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
Lipid-binding serum glycoprotein C-terminal domain-containing protein
NP_001123098.1
  • Confirmed by transcript evidence
NP_510689.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003284.9 Reference assembly

    Range
    16633352..16637632
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001129626.5 → NP_001123098.1  Lipid-binding serum glycoprotein C-terminal domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001123098.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A8WFJ7
    Conserved Domains (2) summary
    smart00329
    Location:286 → 494
    BPI2; BPI/LBP/CETP C-terminal domain
    cl00188
    Location:33 → 252
    BPI; BPI/LBP/CETP domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) domain; binds to and neutralizes lipopolysaccharides from the outer membrane of Gram-negative ...

  2. NM_078288.9 → NP_510689.1  Lipid-binding serum glycoprotein C-terminal domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_510689.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    H2KYI4
    Conserved Domains (2) summary
    smart00329
    Location:284 → 492
    BPI2; BPI/LBP/CETP C-terminal domain
    cl00188
    Location:33 → 252
    BPI; BPI/LBP/CETP domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) domain; binds to and neutralizes lipopolysaccharides from the outer membrane of Gram-negative ...
Nucleotide Protein
Heading Accession and Version

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