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clec-162 C-type lectin domain-containing protein 162 [ Caenorhabditis elegans ]

Gene ID: 182353, updated on 4-Jan-2025

Summary

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Official Symbol
clec-162
Official Full Name
C-type lectin domain-containing protein 162
Primary source
WormBase:WBGene00007399
Locus tag
CELE_C07A9.1
See related
AllianceGenome:WB:WBGene00007399
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable carbohydrate binding activity. Predicted to be located in extracellular region. [provided by Alliance of Genome Resources, Jan 2025]
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Genomic context

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See clec-162 in Genome Data Viewer
Location:
chromosome: III
Exon count:
5
Sequence:
Chromosome: III; NC_003281.10 (9723239..9725214, complement)

Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene Protein kinase domain-containing protein;Serine/threonine-protein kinase tousled-like 1 Neighboring gene Putative sodium/calcium exchanger 6 Neighboring gene Putative sodium/calcium exchanger 7 Neighboring gene ncRNA Neighboring gene Uncharacterized protein Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003281.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
C-type lectin domain-containing protein 162
NP_499148.2
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003281.10 Reference assembly

    Range
    9723239..9725214 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_066747.5 → NP_499148.2  C-type lectin domain-containing protein 162 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_499148.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P34312
    Conserved Domains (1) summary
    smart00034
    Location:20 → 145
    CLECT; C-type lectin (CTL) or carbohydrate-recognition domain (CRD)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P34312.2

Gene LinkOut

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