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C15F1.1 ShKT domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 182638, updated on 4-Jan-2025

Summary

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Official Symbol
C15F1.1
Official Full Name
ShKT domain-containing protein
Primary source
WormBase:WBGene00015794
Locus tag
CELE_C15F1.1
See related
AllianceGenome:WB:WBGene00015794
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Orthologous to human THAP4 (THAP domain containing 4). [provided by Alliance of Genome Resources, Jan 2025]
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Genomic context

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See C15F1.1 in Genome Data Viewer
Location:
chromosome: II
Exon count:
7
Sequence:
Chromosome: II; NC_003280.10 (6989880..6991686)

Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene Ribosomal protein L29 Neighboring gene Uncharacterized protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003280.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
  2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

General protein information

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Preferred Names
ShKT domain-containing protein
NP_001368662.1
  • Confirmed by transcript evidence
NP_001370980.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003280.10 Reference assembly

    Range
    6989880..6991686
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001381484.2 → NP_001368662.1  ShKT domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A2C9C2Z6
    Conserved Domains (2) summary
    cd07828
    Location:77 → 251
    lipocalin_heme-bd-THAP4-like; heme-binding beta-barrel domain of human THAP4, Arabidopsis thaliana nitrobindin, and similar proteins
    pfam01549
    Location:25 → 61
    ShK; ShK domain-like

  2. NM_001383877.2 → NP_001370980.1  ShKT domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A2C9C2Z4
    Conserved Domains (2) summary
    cd07828
    Location:77 → 235
    lipocalin_heme-bd-THAP4-like; heme-binding beta-barrel domain of human THAP4, Arabidopsis thaliana nitrobindin, and similar proteins
    pfam01549
    Location:25 → 61
    ShK; ShK domain-like
Nucleotide Protein
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