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F01D5.10 Carbohydrate sulfotransferase [ Caenorhabditis elegans ]

Gene ID: 184059, updated on 4-Jan-2025

Summary

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Official Symbol
F01D5.10
Official Full Name
Carbohydrate sulfotransferase
Primary source
WormBase:WBGene00008500
Locus tag
CELE_F01D5.10
See related
AllianceGenome:WB:WBGene00008500
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable chondroitin 4-sulfotransferase activity. Predicted to be involved in chondroitin sulfate biosynthetic process and positive regulation of response to oxidative stress. Predicted to be located in membrane. [provided by Alliance of Genome Resources, Jan 2025]
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Genomic context

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See F01D5.10 in Genome Data Viewer
Location:
chromosome: II
Exon count:
8
Sequence:
Chromosome: II; NC_003280.10 (14017839..14021330, complement)

Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene Serine aminopeptidase S33 domain-containing protein Neighboring gene Serine aminopeptidase S33 domain-containing protein Neighboring gene CYtochrome P450 family Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene pseudo Neighboring gene ncRNA Neighboring gene Ski protein homolog

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003280.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
  2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables chondroitin 4-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in chondroitin sulfate biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
involved_in positive regulation of response to oxidative stress IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Carbohydrate sulfotransferase
NP_496940.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003280.10 Reference assembly

    Range
    14017839..14021330 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_064539.2 → NP_496940.1  Carbohydrate sulfotransferase [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_496940.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9XVA5
    Conserved Domains (1) summary
    cl22970
    Location:115 → 345
    Sulfotransfer_2; Sulfotransferase family
Nucleotide Protein
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