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cpin-1 Amidohydrolase-related domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 185473, updated on 9-Dec-2024

Summary

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Official Symbol
cpin-1
Official Full Name
Amidohydrolase-related domain-containing protein
Primary source
WormBase:WBGene00000775
Locus tag
CELE_F38E11.3
See related
AllianceGenome:WB:WBGene00000775
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable deaminase activity. Predicted to be active in cytosol. Orthologous to human GDA (guanine deaminase). [provided by Alliance of Genome Resources, Dec 2024]
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Genomic context

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See cpin-1 in Genome Data Viewer
Location:
chromosome: IV
Exon count:
7
Sequence:
Chromosome: IV; NC_003282.8 (9451334..9453372)

Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene SHSP domain-containing protein Neighboring gene SHSP domain-containing protein Neighboring gene ncRNA Neighboring gene PAN domain protein Neighboring gene ncRNA Neighboring gene putative coatomer subunit beta' Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003282.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Developing a rapid throughput screen for detection of nematicidal activity of plant cysteine proteinases: the role of Caenorhabditis elegans cystatins. Phiri AM, et al. Parasitology, 2014 Feb. PMID 24001183
  2. Differentially expressed, abundant trans-spliced cDNAs from larval Brugia malayi. Gregory WF, et al. Mol Biochem Parasitol, 1997 Jul. PMID 9233676
  3. Cypin: a cytosolic regulator of PSD-95 postsynaptic targeting. Firestein BL, et al. Neuron, 1999 Nov. PMID 10595517
  4. Systems-level transcriptional regulation of Caenorhabditis elegans metabolism. Nanda S, et al. Mol Syst Biol, 2023 May 9. PMID 36942755, Free PMC Article
  5. Interactome analysis of Caenorhabditis elegans synapses by TurboID-based proximity labeling. Artan M, et al. J Biol Chem, 2021 Sep. PMID 34416233, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables deaminase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
  
enables hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
Amidohydrolase-related domain-containing protein
NP_501669.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003282.8 Reference assembly

    Range
    9451334..9453372
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_069268.4 → NP_501669.1  Amidohydrolase-related domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_501669.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q20166
    Conserved Domains (1) summary
    cd01313
    Location:13 → 420
    Met_dep_hydrolase_E; Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the ...
Nucleotide Protein
Heading Accession and Version

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