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clc-11 Transmembrane protein [ Caenorhabditis elegans ]

Gene ID: 185758, updated on 4-Jan-2025

Summary

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Official Symbol
clc-11
Official Full Name
Transmembrane protein
Primary source
WormBase:WBGene00009710
Locus tag
CELE_F44G3.10
See related
AllianceGenome:WB:WBGene00009710
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Involved in innate immune response. Predicted to be located in membrane. [provided by Alliance of Genome Resources, Jan 2025]
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Genomic context

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See clc-11 in Genome Data Viewer
Location:
chromosome: V
Exon count:
4
Sequence:
Chromosome: V; NC_003283.11 (16138760..16139629, complement)

Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene SERPIN domain-containing protein Neighboring gene pseudo Neighboring gene CLaudin-like in Caenorhabditis Neighboring gene F-box domain-containing protein Neighboring gene F-box domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003283.11

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A conserved role for a GATA transcription factor in regulating epithelial innate immune responses. Shapira M, et al. Proc Natl Acad Sci U S A, 2006 Sep 19. PMID 16968778, Free PMC Article
  2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Process Evidence Code Pubs
involved_in innate immune response HEP PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Transmembrane protein
NP_507063.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003283.11 Reference assembly

    Range
    16138760..16139629 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_074662.5 → NP_507063.1  Transmembrane protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_507063.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    O45515
    Conserved Domains (1) summary
    pfam06653
    Location:76 → 160
    Claudin_3; Tight junction protein, Claudin-like
Nucleotide Protein
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