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F45E4.5 Secreted protein;YTH domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 185796, updated on 4-Jan-2025

Summary

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Official Symbol
F45E4.5
Official Full Name
Secreted protein;YTH domain-containing protein
Primary source
WormBase:WBGene00018470
Locus tag
CELE_F45E4.5
See related
AllianceGenome:WB:WBGene00018470
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Involved in defense response to Gram-negative bacterium. [provided by Alliance of Genome Resources, Jan 2025]
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Genomic context

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See F45E4.5 in Genome Data Viewer
Location:
chromosome: IV
Exon count:
4
Sequence:
Chromosome: IV; NC_003282.8 (7628166..7629042, complement)

Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene Protein clarinet Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene EGF-like domain-containing protein Neighboring gene Transcriptional activator plp-1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003282.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Nematode Peptides with Host-Directed Anti-inflammatory Activity Rescue Caenorhabditis elegans from a Burkholderia pseudomallei Infection. Lim MP, et al. Front Microbiol, 2016. PMID 27672387, Free PMC Article
  2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Process Evidence Code Pubs
involved_in defense response to Gram-negative bacterium IMP
Inferred from Mutant Phenotype
more info
 PubMed 

General protein information

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Preferred Names
Secreted protein;YTH domain-containing protein
NP_001294145.1
  • Confirmed by transcript evidence
NP_001294147.1
  • Confirmed by transcript evidence
NP_001380162.1
  • Confirmed by transcript evidence
NP_501239.3
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003282.8 Reference assembly

    Range
    7628166..7629042 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_068838.5 → NP_501239.3  Secreted protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_501239.3

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q94228

  2. NM_001392337.1 → NP_001380162.1  YTH domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    W6RXU1

  3. NM_001307216.2 → NP_001294145.1  Secreted protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001294145.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    W6RQS8

  4. NM_001307218.3 → NP_001294147.1  YTH domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001294147.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    W6RRR1
Nucleotide Protein
Heading Accession and Version

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