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F56H6.4 Carbohydrate sulfotransferase [ Caenorhabditis elegans ]

Gene ID: 186415, updated on 9-Dec-2024

Summary

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Official Symbol
F56H6.4
Official Full Name
Carbohydrate sulfotransferase
Primary source
WormBase:WBGene00010165
Locus tag
CELE_F56H6.4
See related
AllianceGenome:WB:WBGene00010165
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable chondroitin 4-sulfotransferase activity. Predicted to be involved in chondroitin sulfate biosynthetic process and positive regulation of response to oxidative stress. Predicted to be located in membrane. [provided by Alliance of Genome Resources, Dec 2024]
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Genomic context

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See F56H6.4 in Genome Data Viewer
Location:
chromosome: I
Exon count:
7
Sequence:
Chromosome: I; NC_003279.8 (12290449..12292212)

Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene DUF268 domain-containing protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene GDP-mannose 4,6 dehydratase 2 Neighboring gene B3GNT1, Beta-1,3-N-acetylGucosamiNylTransferase 1, homolog Neighboring gene Glycosyltransferase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003279.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables chondroitin 4-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in chondroitin sulfate biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
involved_in positive regulation of response to oxidative stress IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Carbohydrate sulfotransferase
NP_493105.1
  • Partially confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003279.8 Reference assembly

    Range
    12290449..12292212
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_060704.1 → NP_493105.1  Carbohydrate sulfotransferase [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_493105.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    O45581
    Conserved Domains (1) summary
    pfam03567
    Location:64 → 297
    Sulfotransfer_2; Sulfotransferase family
Nucleotide Protein
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