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F57B7.2 SCP domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 186438, updated on 4-Jan-2025

Summary

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Official Symbol
F57B7.2
Official Full Name
SCP domain-containing protein
Primary source
WormBase:WBGene00010192
Locus tag
CELE_F57B7.2
See related
AllianceGenome:WB:WBGene00010192
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be active in extracellular space. [provided by Alliance of Genome Resources, Jan 2025]
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Genomic context

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See F57B7.2 in Genome Data Viewer
Location:
chromosome: V
Exon count:
4
Sequence:
Chromosome: V; NC_003283.11 (11441916..11443603, complement)

Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene G-protein coupled receptor dmsr-1 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Metalloprotease mig-17

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003283.11

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of the intracellular neurexin interactome by in vivo proximity ligation suggests its involvement in presynaptic actin assembly. Schaan Profes M, et al. PLoS Biol, 2024 Jan. PMID 38252619, Free PMC Article
  2. Depletion of endogenously biotinylated carboxylases enhances the sensitivity of TurboID-mediated proximity labeling in Caenorhabditis elegans. Artan M, et al. J Biol Chem, 2022 Sep. PMID 35933017, Free PMC Article
  3. Interactome analysis of Caenorhabditis elegans synapses by TurboID-based proximity labeling. Artan M, et al. J Biol Chem, 2021 Sep. PMID 34416233, Free PMC Article
  4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Component Evidence Code Pubs
is_active_in extracellular space IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
SCP domain-containing protein
NP_001256323.1
  • Confirmed by transcript evidence
NP_001367203.1
  • Partially confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003283.11 Reference assembly

    Range
    11441916..11443603 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001269394.2 → NP_001256323.1  SCP domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001256323.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q20928
    Conserved Domains (1) summary
    cd05382
    Location:112 → 245
    CAP_GAPR1-like; CAP (cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins) domain of Golgi-associated plant pathogenesis-related protein 1 and similar proteins

  2. NM_001380764.1 → NP_001367203.1  SCP domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    B6EU60
    Conserved Domains (1) summary
    cd05382
    Location:153 → 286
    CAP_GAPR1-like; CAP (cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins) domain of Golgi-associated plant pathogenesis-related protein 1 and similar proteins
Nucleotide Protein
Heading Accession and Version

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