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srb-16 Serpentine receptor class beta-16 [ Caenorhabditis elegans ]

Gene ID: 186489, updated on 9-Dec-2024

Summary

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Official Symbol
srb-16
Official Full Name
Serpentine receptor class beta-16
Primary source
WormBase:WBGene00019025
Locus tag
CELE_F58A6.6
See related
AllianceGenome:WB:WBGene00019025
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable G protein-coupled receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway and sensory perception of chemical stimulus. Predicted to be located in dendrite; perikaryon; and plasma membrane. Is expressed in several structures, including intestine; nerve ring; neurons; pharynx; and reproductive system. [provided by Alliance of Genome Resources, Dec 2024]
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Genomic context

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See srb-16 in Genome Data Viewer
Location:
chromosome: II
Exon count:
8
Sequence:
Chromosome: II; NC_003280.10 (5148530..5150929, complement)

Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial Neighboring gene Uncharacterized protein Neighboring gene Serpentine receptor class beta-12 Neighboring gene Serpentine receptor class beta-13 Neighboring gene Major sperm protein 19/31/40/45/50/51/53/59/61/65/81/113/142

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003280.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables G protein-coupled receptor activity IEA
Inferred from Electronic Annotation
more info
  
enables transmembrane signaling receptor activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in G protein-coupled receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
  
involved_in sensory perception of chemical stimulus IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cell projection IEA
Inferred from Electronic Annotation
more info
  
located_in dendrite IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in perikaryon IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Serpentine receptor class beta-16
NP_494956.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003280.10 Reference assembly

    Range
    5148530..5150929 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_062555.4 → NP_494956.1  Serpentine receptor class beta-16 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_494956.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q20961
    Conserved Domains (1) summary
    cl11607
    Location:9 → 337
    7TM_GPCR_Srab; Serpentine type 7TM GPCR receptor class ab chemoreceptor
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q20961.1

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