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K08F9.3 GH18 domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 187168, updated on 9-Dec-2024

Summary

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Official Symbol
K08F9.3
Official Full Name
GH18 domain-containing protein
Primary source
WormBase:WBGene00010686
Locus tag
CELE_K08F9.3
See related
AllianceGenome:WB:WBGene00010686
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be involved in carbohydrate metabolic process. Predicted to be located in membrane. [provided by Alliance of Genome Resources, Dec 2024]
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Genomic context

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See K08F9.3 in Genome Data Viewer
Location:
chromosome: V
Exon count:
6
Sequence:
Chromosome: V; NC_003283.11 (15140547..15144079)

Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene Seven TM Receptor Neighboring gene Anaphase-promoting complex subunit 4-like WD40 domain-containing protein Neighboring gene Major facilitator superfamily (MFS) profile domain-containing protein Neighboring gene Uncharacterized protein Neighboring gene Transmembrane protein;Transposase Neighboring gene Hexosyltransferase Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003283.11

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Gene Ontology Provided by WormBase

Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
GH18 domain-containing protein
NP_001263895.1
  • Partially confirmed by transcript evidence
NP_001263896.1
  • Confirmed by transcript evidence
NP_001263897.1
  • Partially confirmed by transcript evidence
NP_506735.3
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003283.11 Reference assembly

    Range
    15140547..15144079
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001276966.3 → NP_001263895.1  GH18 domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001263895.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    L8E826
    Conserved Domains (2) summary
    pfam00704
    Location:59 → 209
    Glyco_hydro_18; Glycosyl hydrolases family 18
    cl10447
    Location:61 → 213
    GH18_chitinase-like; The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have ...

  2. NM_001276967.4 → NP_001263896.1  GH18 domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001263896.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    L8EC39
    Conserved Domains (2) summary
    pfam00704
    Location:93 → 243
    Glyco_hydro_18; Glycosyl hydrolases family 18
    cl10447
    Location:95 → 247
    GH18_chitinase-like; The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have ...

  3. NM_001276968.3 → NP_001263897.1  GH18 domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001263897.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    L8E972
    Conserved Domains (2) summary
    pfam00704
    Location:122 → 272
    Glyco_hydro_18; Glycosyl hydrolases family 18
    cl10447
    Location:124 → 276
    GH18_chitinase-like; The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have ...

  4. NM_074334.6 → NP_506735.3  GH18 domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_506735.3

    Status: REVIEWED

    UniProtKB/TrEMBL
    O17940
    Conserved Domains (2) summary
    pfam00704
    Location:109 → 259
    Glyco_hydro_18; Glycosyl hydrolases family 18
    cl10447
    Location:111 → 263
    GH18_chitinase-like; The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have ...
Nucleotide Protein
Heading Accession and Version

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