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ttr-8 Transthyretin-like family protein [ Caenorhabditis elegans ]

Gene ID: 187856, updated on 2-Nov-2024

Summary

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Official Symbol
ttr-8
Official Full Name
Transthyretin-like family protein
Primary source
WormBase:WBGene00020049
Locus tag
CELE_R13A5.6
See related
AllianceGenome:WB:WBGene00020049
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be located in cell surface and extracellular region. Is expressed in hypodermis and nervous system. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See ttr-8 in Genome Data Viewer
Location:
chromosome: III
Exon count:
2
Sequence:
Chromosome: III; NC_003281.10 (7564500..7565347, complement)

Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Homeobox protein ceh-13 Neighboring gene Ligand-Gated ion Channel Neighboring gene Transthyretin-like family protein Neighboring gene FBA_2 domain-containing protein Neighboring gene Large ribosomal subunit protein uL6

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003281.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Analysis of protein domain families in Caenorhabditis elegans. Sonnhammer EL, et al. Genomics, 1997 Dec 1. PMID 9417907
  2. Detection of broadly expressed neuronal genes in C. elegans. Ruvinsky I, et al. Dev Biol, 2007 Feb 15. PMID 17046742
  3. Characterization of the intracellular neurexin interactome by in vivo proximity ligation suggests its involvement in presynaptic actin assembly. Schaan Profes M, et al. PLoS Biol, 2024 Jan. PMID 38252619, Free PMC Article
  4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
  
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Transthyretin-like family protein
NP_498657.1
  • Partially confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003281.10 Reference assembly

    Range
    7564500..7565347 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_066256.2 → NP_498657.1  Transthyretin-like family protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_498657.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q95Y93
    Conserved Domains (1) summary
    pfam01060
    Location:26 → 104
    TTR-52; Transthyretin-like family
Nucleotide Protein
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