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clc-9 CLaudin-like in Caenorhabditis [ Caenorhabditis elegans ]

Gene ID: 188130, updated on 4-Jan-2025

Summary

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Official Symbol
clc-9
Official Full Name
CLaudin-like in Caenorhabditis
Primary source
WormBase:WBGene00011479
Locus tag
CELE_T05E11.2
See related
AllianceGenome:WB:WBGene00011479
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be located in membrane. Predicted to be active in plasma membrane. [provided by Alliance of Genome Resources, Jan 2025]
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Genomic context

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See clc-9 in Genome Data Viewer
Location:
chromosome: IV
Exon count:
6
Sequence:
Chromosome: IV; NC_003282.8 (11112941..11116755)

Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene Small ribosomal subunit protein uS7 Neighboring gene ncRNA Neighboring gene Intramembrane protease 2 Neighboring gene Endoplasmin homolog Neighboring gene DNA topoisomerase (ATP-hydrolyzing);Meiotic recombination protein spo-11 Neighboring gene SWI/SNF chromatin remodeling complex core catalytic subunit swsn-4

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003282.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Changes in Caenorhabditis elegans gene expression following exposure to Photorhabdus luminescens strain TT01. Hoinville ME, et al. Dev Comp Immunol, 2018 May. PMID 29203330
  2. The embryonic muscle transcriptome of Caenorhabditis elegans. Fox RM, et al. Genome Biol, 2007. PMID 17848203, Free PMC Article
  3. Amino acid and protein specificity of protein fatty acylation in C. elegans. Zhang B, et al. Proc Natl Acad Sci U S A, 2024 Jan 30. PMID 38252833, Free PMC Article
  4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
CLaudin-like in Caenorhabditis
NP_001129867.1
  • Confirmed by transcript evidence;
    Product from WormBase gene class clc
NP_502078.3
  • Confirmed by transcript evidence;
    Product from WormBase gene class clc

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003282.8 Reference assembly

    Range
    11112941..11116755
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001136395.2 → NP_001129867.1  CLaudin-like in Caenorhabditis [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001129867.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    B3GWC2

  2. NM_069677.4 → NP_502078.3  CLaudin-like in Caenorhabditis [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_502078.3

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q22234
Nucleotide Protein
Heading Accession and Version

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