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hrde-4 Protein hrde-4 [ Caenorhabditis elegans ]

Gene ID: 188371, updated on 2-Nov-2024

Summary

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Official Symbol
hrde-4
Official Full Name
Protein hrde-4
Primary source
WormBase:WBGene00020403
Locus tag
CELE_T10B11.7
See related
AllianceGenome:WB:WBGene00020403
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be involved in regulatory ncRNA-mediated gene silencing. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See hrde-4 in Genome Data Viewer
Location:
chromosome: I
Exon count:
11
Sequence:
Chromosome: I; NC_003279.8 (6945598..6950499, complement)

Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene DUF1273 family protein Neighboring gene Transmembrane protein 53 Neighboring gene Putative pterin-4-alpha-carbinolamine dehydratase Neighboring gene BACK domain-containing protein Neighboring gene Endoribonuclease rege-1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003279.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The RNAi Inheritance Machinery of Caenorhabditis elegans. Spracklin G, et al. Genetics, 2017 Jul. PMID 28533440, Free PMC Article
  2. A protein domain-based interactome network for C. elegans early embryogenesis. Boxem M, et al. Cell, 2008 Aug 8. PMID 18692475, Free PMC Article
  3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Process Evidence Code Pubs
involved_in regulatory ncRNA-mediated gene silencing IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Protein hrde-4
NP_001040682.2
  • Confirmed by transcript evidence
NP_001367601.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003279.8 Reference assembly

    Range
    6945598..6950499 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001047217.5 → NP_001040682.2  Protein hrde-4 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001040682.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    C6S3L8, H2KZ49

  2. NM_001380623.1 → NP_001367601.1  Protein hrde-4 [Caenorhabditis elegans]

    Status: REVIEWED

Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
H2KZ49.1

Gene LinkOut

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