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T15B7.1 Fibrinogen C-terminal domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 188512, updated on 2-Nov-2024

Summary

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Official Symbol
T15B7.1
Official Full Name
Fibrinogen C-terminal domain-containing protein
Primary source
WormBase:WBGene00020516
Locus tag
CELE_T15B7.1
See related
AllianceGenome:WB:WBGene00020516
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be active in collagen-containing extracellular matrix and extracellular space. Orthologous to several human genes including FCN1 (ficolin 1); FCN2 (ficolin 2); and FCN3 (ficolin 3). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See T15B7.1 in Genome Data Viewer
Location:
chromosome: V
Exon count:
9
Sequence:
Chromosome: V; NC_003283.11 (6842737..6846671)

Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene Nematode cuticle collagen N-terminal domain-containing protein Neighboring gene GRIP domain-containing protein Neighboring gene Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase hpo-8 Neighboring gene Ligand-Gated ion Channel Neighboring gene ncRNA Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003283.11

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Component Evidence Code Pubs
is_active_in collagen-containing extracellular matrix IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in extracellular space IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
Fibrinogen C-terminal domain-containing protein
NP_504743.3
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003283.11 Reference assembly

    Range
    6842737..6846671
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_072342.6 → NP_504743.3  Fibrinogen C-terminal domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_504743.3

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q5ZR75
    Conserved Domains (2) summary
    smart00034
    Location:21 → 138
    CLECT; C-type lectin (CTL) or carbohydrate-recognition domain (CRD)
    cl00085
    Location:144 → 368
    FReD; Fibrinogen-related domains (FReDs); C terminal globular domain of fibrinogen. Fibrinogen is involved in blood clotting, being activated by thrombin to assemble into fibrin clots. The N-termini of 2 times 3 chains come together to form a globular ...
Nucleotide Protein
Heading Accession and Version

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