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hpo-8 Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase hpo-8 [ Caenorhabditis elegans ]

Gene ID: 188513, updated on 2-Nov-2024

Summary

Official Symbol
hpo-8
Official Full Name
Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase hpo-8
Primary source
WormBase:WBGene00020517
Locus tag
CELE_T15B7.2
See related
AllianceGenome:WB:WBGene00020517
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable 3-hydroxyacyl-CoA dehydratase activity. Predicted to be involved in fatty acid elongation; sphingolipid biosynthetic process; and very long-chain fatty acid biosynthetic process. Predicted to be located in membrane. Predicted to be active in endoplasmic reticulum membrane. Is expressed in gonadal sheath cell. Human ortholog(s) of this gene implicated in congenital myopathy. Orthologous to several human genes including HACD2 (3-hydroxyacyl-CoA dehydratase 2). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

See hpo-8 in Genome Data Viewer
Location:
chromosome: V
Exon count:
5
Sequence:
Chromosome: V; NC_003283.11 (6839289..6840256)

Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene Nematode cuticle collagen N-terminal domain-containing protein Neighboring gene Chloride channel CLIC-like protein 1 Neighboring gene Nematode cuticle collagen N-terminal domain-containing protein Neighboring gene GRIP domain-containing protein Neighboring gene Ligand-Gated ion Channel Neighboring gene Fibrinogen C-terminal domain-containing protein Neighboring gene ncRNA

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables 3-hydroxyacyl-CoA dehydratase activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables lyase activity IEA
Inferred from Electronic Annotation
more info
 
enables very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in fatty acid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 
involved_in fatty acid elongation IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in sphingolipid biosynthetic process IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in very long-chain fatty acid biosynthetic process IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
is_active_in endoplasmic reticulum membrane IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase hpo-8
NP_504740.2
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003283.11 Reference assembly

    Range
    6839289..6840256
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_072339.9NP_504740.2  Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase hpo-8 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_504740.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O17040
    Conserved Domains (1) summary
    pfam04387
    Location:50210
    PTPLA; Protein tyrosine phosphatase-like protein, PTPLA