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T15B12.1 Calponin-homology (CH) domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 188527, updated on 4-Jan-2025

Summary

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Official Symbol
T15B12.1
Official Full Name
Calponin-homology (CH) domain-containing protein
Primary source
WormBase:WBGene00020530
Locus tag
CELE_T15B12.1
See related
AllianceGenome:WB:WBGene00020530
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Located in mitochondrion. Orthologous to human SMTNL2 (smoothelin like 2). [provided by Alliance of Genome Resources, Jan 2025]
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Genomic context

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See T15B12.1 in Genome Data Viewer
Location:
chromosome: III
Exon count:
11
Sequence:
Chromosome: III; NC_003281.10 (5288180..5298360)

Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene 5-demethoxyubiquinone hydroxylase, mitochondrial Neighboring gene Transposase Neighboring gene tRNA-Met Neighboring gene non-specific serine/threonine protein kinase Neighboring gene Uncharacterized protein Neighboring gene tRNA-Thr Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003281.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Determining the sub-cellular localization of proteins within Caenorhabditis elegans body wall muscle. Meissner B, et al. PLoS One, 2011. PMID 21611156, Free PMC Article
  2. Interactome analysis of Caenorhabditis elegans synapses by TurboID-based proximity labeling. Artan M, et al. J Biol Chem, 2021 Sep. PMID 34416233, Free PMC Article
  3. Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network. Simonis N, et al. Nat Methods, 2009 Jan. PMID 19123269, Free PMC Article
  4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Component Evidence Code Pubs
located_in mitochondrion HDA PubMed 

General protein information

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Preferred Names
Calponin-homology (CH) domain-containing protein
NP_001367880.1
  • Confirmed by transcript evidence
NP_001379971.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003281.10 Reference assembly

    Range
    5288180..5298360
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001379703.1 → NP_001367880.1  Calponin-homology (CH) domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    G4SJU0
    Conserved Domains (1) summary
    cd21200
    Location:324 → 429
    CH_SMTN-like; calponin homology (CH) domain found in the smoothelin family

  2. NM_001392095.1 → NP_001379971.1  Calponin-homology (CH) domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    G5ECY7
    Conserved Domains (1) summary
    cd21200
    Location:114 → 219
    CH_SMTN-like; calponin homology (CH) domain found in the smoothelin family
Nucleotide Protein
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