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col-78 Col_cuticle_N domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 189274, updated on 9-Dec-2024

Summary

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Official Symbol
col-78
Official Full Name
Col_cuticle_N domain-containing protein
Primary source
WormBase:WBGene00000654
Locus tag
CELE_W07A12.5
See related
AllianceGenome:WB:WBGene00000654
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be located in membrane. [provided by Alliance of Genome Resources, Dec 2024]
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Genomic context

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See col-78 in Genome Data Viewer
Location:
chromosome: II
Exon count:
5
Sequence:
Chromosome: II; NC_003280.10 (9152531..9154336)

Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene Seven TM Receptor;Transmembrane protein Neighboring gene BTB domain-containing protein Neighboring gene ncRNA Neighboring gene Acyltransferase 3 domain-containing protein Neighboring gene Regulator of hypoxia-inducible factor 1 Neighboring gene DapB_N domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003280.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article
  2. OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. Kim W, et al. Genetics, 2018 Oct. PMID 30120140, Free PMC Article
  3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Col_cuticle_N domain-containing protein
NP_001364618.1
  • Partially confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003280.10 Reference assembly

    Range
    9152531..9154336
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001377833.2 → NP_001364618.1  Col_cuticle_N domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9U336
    Conserved Domains (1) summary
    pfam01391
    Location:139 → 216
    Collagen; Collagen triple helix repeat (20 copies)
Nucleotide Protein
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