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Y37D8A.6 LITAF domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 189614, updated on 2-Nov-2024

Summary

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Official Symbol
Y37D8A.6
Official Full Name
LITAF domain-containing protein
Primary source
WormBase:WBGene00012548
Locus tag
CELE_Y37D8A.6
See related
AllianceGenome:WB:WBGene00012548
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable zinc ion binding activity. Predicted to be located in endosome membrane and lysosomal membrane. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See Y37D8A.6 in Genome Data Viewer
Location:
chromosome: III
Exon count:
3
Sequence:
Chromosome: III; NC_003281.10 (12856833..12857911, complement)

Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene Membrane transporter protein Neighboring gene LITAF domain-containing protein Neighboring gene ncRNA Neighboring gene LITAF domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003281.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A genome-wide study of PDZ-domain interactions in C. elegans reveals a high frequency of non-canonical binding. Lenfant N, et al. BMC Genomics, 2010 Nov 26. PMID 21110867, Free PMC Article
  2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables zinc ion binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
located_in endosome membrane IEA
Inferred from Electronic Annotation
more info
  
located_in lysosomal membrane IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
LITAF domain-containing protein
NP_499672.1
  • Partially confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003281.10 Reference assembly

    Range
    12856833..12857911 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_067271.4 → NP_499672.1  LITAF domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_499672.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9XWW3
    Conserved Domains (1) summary
    smart00714
    Location:66 → 132
    LITAF; Possible membrane-associated motif in LPS-induced tumor necrosis factor alpha factor (LITAF), also known as PIG7, and other animal proteins
Nucleotide Protein
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