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Y39F10C.1 Apextrin C-terminal domain-containing protein;Small membrane protein [ Caenorhabditis elegans ]

Gene ID: 189761, updated on 2-Nov-2024

Summary

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Official Symbol
Y39F10C.1
Official Full Name
Apextrin C-terminal domain-containing protein;Small membrane protein
Primary source
WormBase:WBGene00021457
Locus tag
CELE_Y39F10C.1
See related
AllianceGenome:WB:WBGene00021457
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be located in membrane. Predicted to be active in extracellular space. Orthologous to human VMO1 (vitelline membrane outer layer 1 homolog). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See Y39F10C.1 in Genome Data Viewer
Location:
chromosome: II
Exon count:
6
Sequence:
Chromosome: II; NC_003280.10 (675603..678420)

Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene Cystatin domain-containing protein Neighboring gene Vitelline membrane outer layer protein 1 Neighboring gene DUF3828 domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003280.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Component Evidence Code Pubs
is_active_in extracellular space IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Apextrin C-terminal domain-containing protein;Small membrane protein
NP_001254019.1
  • Confirmed by transcript evidence
NP_001303804.1
  • Partially confirmed by transcript evidence
NP_001303805.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003280.10 Reference assembly

    Range
    675603..678420
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001316875.2 → NP_001303804.1  Apextrin C-terminal domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A0M7RF59
    Conserved Domains (2) summary
    cd00220
    Location:23 → 208
    VMO-I; Vitelline membrane outer layer protein I (VMO-I) domain, VMO-I is one of the proteins found in the outer layer of the vitelline membrane of poultry eggs; VMO-I, lysozyme, and VMO-II are tightly bound to ovomucin; this complex forms the backbone of the ...
    pfam03762
    Location:25 → 207
    VOMI; Vitelline membrane outer layer protein I (VOMI)

  2. NM_001267090.1 → NP_001254019.1  Apextrin C-terminal domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001254019.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    G4SN17

  3. NM_001316876.1 → NP_001303805.1  Small membrane protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A0M7REM9

RNA

  1. NR_133628.1 RNA Sequence

    Status: REVIEWED

Nucleotide Protein
Heading Accession and Version

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