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Y53F4B.12 Amino acid permease/ SLC12A domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 190214, updated on 4-Jan-2025

Summary

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Official Symbol
Y53F4B.12
Official Full Name
Amino acid permease/ SLC12A domain-containing protein
Primary source
WormBase:WBGene00013159
Locus tag
CELE_Y53F4B.12
See related
AllianceGenome:WB:WBGene00013159
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable amino acid transmembrane transporter activity. Predicted to be involved in amino acid transport. Predicted to be located in membrane. Predicted to be active in plasma membrane. [provided by Alliance of Genome Resources, Jan 2025]
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Genomic context

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See Y53F4B.12 in Genome Data Viewer
Location:
chromosome: II
Exon count:
13
Sequence:
Chromosome: II; NC_003280.10 (15019223..15025782)

Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene AAA+ ATPase domain-containing protein Neighboring gene Uncharacterized protein Neighboring gene Uncharacterized protein Neighboring gene ncRNA Neighboring gene Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1 Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003280.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables amino acid transmembrane transporter activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in L-arginine transmembrane transport IEA
Inferred from Electronic Annotation
more info
  
involved_in L-lysine transmembrane transport IEA
Inferred from Electronic Annotation
more info
  
involved_in amino acid transport IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
Amino acid permease/ SLC12A domain-containing protein
NP_001293550.1
  • Confirmed by transcript evidence
NP_497097.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003280.10 Reference assembly

    Range
    15019223..15025782
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_064696.5 → NP_497097.1  Amino acid permease/ SLC12A domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_497097.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9NAB9
    Conserved Domains (1) summary
    TIGR00906
    Location:3 → 366
    2A0303; cationic amino acid transport permease

  2. NM_001306621.3 → NP_001293550.1  Amino acid permease/ SLC12A domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001293550.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    U4PLX3
    Conserved Domains (1) summary
    TIGR00906
    Location:3 → 407
    2A0303; cationic amino acid transport permease
Nucleotide Protein
Heading Accession and Version

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