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slr-2 Synthetic with Lin-35/Rb [ Caenorhabditis elegans ]

Gene ID: 190396, updated on 9-Dec-2024

Summary

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Official Symbol
slr-2
Official Full Name
Synthetic with Lin-35/Rb
Primary source
WormBase:WBGene00013350
Locus tag
CELE_Y59A8B.13
See related
AllianceGenome:WB:WBGene00013350
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Is expressed in intestine. [provided by Alliance of Genome Resources, Dec 2024]
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Genomic context

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See slr-2 in Genome Data Viewer
Location:
chromosome: V
Exon count:
10
Sequence:
Chromosome: V; NC_003283.11 (18087123..18098118)

Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene F-box domain-containing protein Neighboring gene MATH domain-containing protein Neighboring gene Serine/threonine-protein kinase par-4 Neighboring gene Deoxyribonuclease TATDN2 Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003283.11

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Active transcriptomic and proteomic reprogramming in the C. elegans nucleotide excision repair mutant xpa-1. Arczewska KD, et al. Nucleic Acids Res, 2013 May 1. PMID 23580547, Free PMC Article
  2. Coordinated regulation of intestinal functions in C. elegans by LIN-35/Rb and SLR-2. Kirienko NV, et al. PLoS Genet, 2008 Apr 25. PMID 18437219, Free PMC Article
  3. Box C/D small nucleolar ribonucleoproteins regulate mitochondrial surveillance and innate immunity. Tjahjono E, et al. PLoS Genet, 2022 Mar. PMID 35275914, Free PMC Article
  4. SLR-2 and JMJC-1 regulate an evolutionarily conserved stress-response network. Kirienko NV, et al. EMBO J, 2010 Feb 17. PMID 20057358, Free PMC Article
  5. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
Synthetic with Lin-35/Rb
NP_001256772.1
  • Product from WormBase gene class slr;
    Confirmed by transcript evidence
NP_001256773.1
  • Product from WormBase gene class slr;
    Confirmed by transcript evidence
NP_001256774.1
  • Product from WormBase gene class slr;
    Confirmed by transcript evidence
NP_001256775.1
  • Product from WormBase gene class slr;
    Confirmed by transcript evidence
NP_001256776.1
  • Product from WormBase gene class slr;
    Confirmed by transcript evidence
NP_001256777.1
  • Product from WormBase gene class slr;
    Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003283.11 Reference assembly

    Range
    18087123..18098118
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001269843.4 → NP_001256772.1  Synthetic with Lin-35/Rb [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001256772.1

    Status: REVIEWED

    Conserved Domains (1) summary
    sd00017
    Location:48 → 68
    ZF_C2H2; C2H2 Zn finger [structural motif]

  2. NM_001269844.3 → NP_001256773.1  Synthetic with Lin-35/Rb [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001256773.1

    Status: REVIEWED

    Conserved Domains (1) summary
    sd00017
    Location:48 → 68
    ZF_C2H2; C2H2 Zn finger [structural motif]

  3. NM_001269845.1 → NP_001256774.1  Synthetic with Lin-35/Rb [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001256774.1

    Status: REVIEWED

    Conserved Domains (1) summary
    sd00017
    Location:48 → 68
    ZF_C2H2; C2H2 Zn finger [structural motif]

  4. NM_001269846.1 → NP_001256775.1  Synthetic with Lin-35/Rb [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001256775.1

    Status: REVIEWED

    Conserved Domains (1) summary
    sd00017
    Location:48 → 68
    ZF_C2H2; C2H2 Zn finger [structural motif]

  5. NM_001269847.3 → NP_001256776.1  Synthetic with Lin-35/Rb [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001256776.1

    Status: REVIEWED

  6. NM_001269848.1 → NP_001256777.1  Synthetic with Lin-35/Rb [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001256777.1

    Status: REVIEWED

Nucleotide Protein
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