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Y71F9AL.12 DUF3306 domain-containing protein;Increased recombination centers protein 6;Pre-rRNA-processing protein TSR2 homolog;UAE_UbL domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 190588, updated on 18-Sep-2024

Summary

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Official Symbol
Y71F9AL.12
Official Full Name
DUF3306 domain-containing protein;Increased recombination centers protein 6;Pre-rRNA-processing protein TSR2 homolog;UAE_UbL domain-containing protein
Primary source
WormBase:WBGene00022117
Locus tag
CELE_Y71F9AL.12
See related
AllianceGenome:WB:WBGene00022117
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
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Genomic context

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See Y71F9AL.12 in Genome Data Viewer
Location:
chromosome: I
Exon count:
8
Sequence:
Chromosome: I; NC_003279.8 (2870141..2875291, complement)

Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene Plasma membrane proteolipid 3 Neighboring gene ncRNA Neighboring gene RING-type E3 ubiquitin transferase Neighboring gene Large ribosomal subunit protein uL1 Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003279.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. DEPS-1 is required for piRNA-dependent silencing and PIWI condensate organisation in Caenorhabditis elegans. Suen KM, et al. Nat Commun, 2020 Aug 25. PMID 32843637, Free PMC Article
  2. Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules. Cipriani PG, et al. Elife, 2021 Jul 5. PMID 34223818, Free PMC Article
  3. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
  4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

General protein information

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Preferred Names
DUF3306 domain-containing protein;Increased recombination centers protein 6;Pre-rRNA-processing protein TSR2 homolog;UAE_UbL domain-containing protein
NP_001360592.1
  • Partially confirmed by transcript evidence
NP_001360593.1
  • Confirmed by transcript evidence
NP_001360594.1
  • Confirmed by transcript evidence
NP_001360595.1
  • Confirmed by transcript evidence
NP_001360596.1
  • Confirmed by transcript evidence
NP_001360597.1
  • Confirmed by transcript evidence
NP_001360598.1
  • Confirmed by transcript evidence
NP_491060.3
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003279.8 Reference assembly

    Range
    2870141..2875291 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_058659.6 → NP_491060.3  Increased recombination centers protein 6 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_491060.3

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9N4I5

  2. NM_001373761.3 → NP_001360592.1  Increased recombination centers protein 6 [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A4V0III5

  3. NM_001373762.3 → NP_001360595.1  Increased recombination centers protein 6 [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A4V0IJT8

  4. NM_001373764.2 → NP_001360596.1  UAE_UbL domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A4V0IJP4

  5. NM_001373765.2 → NP_001360593.1  DUF3306 domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A4V0IKZ6

  6. NM_001373766.2 → NP_001360594.1  Pre-rRNA-processing protein TSR2 homolog [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A4V0ILF5

  7. NM_001373767.2 → NP_001360597.1  DUF3306 domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A4V0IK83

  8. NM_001373768.2 → NP_001360598.1  DUF3306 domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A4V0IMX7
Nucleotide Protein
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